View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8350_low_27 (Length: 268)

Name: NF8350_low_27
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8350_low_27
NF8350_low_27
[»] scaffold0907 (1 HSPs)
scaffold0907 (24-208)||(247-431)
[»] chr6 (7 HSPs)
chr6 (202-255)||(30232978-30233031)
chr6 (207-255)||(136623-136671)
chr6 (208-255)||(30231475-30231522)
chr6 (205-255)||(11968549-11968599)
chr6 (209-255)||(138278-138324)
chr6 (209-255)||(146299-146345)
chr6 (203-255)||(11967240-11967292)
[»] chr2 (5 HSPs)
chr2 (204-255)||(1147742-1147793)
chr2 (208-255)||(1149260-1149307)
chr2 (209-255)||(1309396-1309442)
chr2 (206-255)||(8320777-8320826)
chr2 (203-255)||(25561731-25561783)
[»] chr7 (6 HSPs)
chr7 (209-255)||(26146779-26146825)
chr7 (207-255)||(26135637-26135685)
chr7 (210-255)||(10957226-10957271)
chr7 (208-255)||(10955842-10955889)
chr7 (205-253)||(43442837-43442885)
chr7 (208-255)||(8426958-8427005)
[»] chr4 (9 HSPs)
chr4 (206-255)||(1521266-1521315)
chr4 (204-255)||(1519804-1519855)
chr4 (208-255)||(35350180-35350227)
chr4 (207-255)||(39057839-39057887)
chr4 (209-255)||(35348795-35348841)
chr4 (209-255)||(39056423-39056469)
chr4 (204-255)||(26629784-26629835)
chr4 (208-255)||(26631291-26631338)
chr4 (212-255)||(36846631-36846674)
[»] chr5 (9 HSPs)
chr5 (208-255)||(28702566-28702613)
chr5 (197-255)||(41144590-41144648)
chr5 (205-249)||(1102612-1102656)
chr5 (205-255)||(10735757-10735807)
chr5 (208-248)||(1104047-1104087)
chr5 (203-255)||(10737010-10737062)
chr5 (207-255)||(35081509-35081557)
chr5 (207-255)||(13519469-13519516)
chr5 (207-255)||(41143236-41143284)
[»] chr1 (7 HSPs)
chr1 (209-255)||(26286410-26286456)
chr1 (209-255)||(26287856-26287902)
chr1 (203-255)||(5611718-5611770)
chr1 (207-255)||(5613157-5613205)
chr1 (206-255)||(48527529-48527578)
chr1 (209-255)||(48528969-48529015)
chr1 (206-250)||(15978888-15978932)
[»] chr3 (2 HSPs)
chr3 (209-255)||(37416510-37416556)
chr3 (210-253)||(45147272-45147315)
[»] chr8 (4 HSPs)
chr8 (210-255)||(43202095-43202140)
chr8 (205-255)||(24306197-24306247)
chr8 (209-255)||(31844366-31844412)
chr8 (203-255)||(31845866-31845918)


Alignment Details
Target: scaffold0907 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold0907
Description:

Target: scaffold0907; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 431 - 247
Alignment:
Q  24 ggtcaactatgcagcaggcatattcatgttagtggaaacataatggcccatataattcaaaacaaaatccaggcgaataacacaattcttgataaagata 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  431 ggtcaactatgcagcaggcatattcatgttagtggaaacataatggcccatataattcaaaacaaaatccaggcgaataacacaattcttgataaagata 332  T
Q  124 tggaactcaatttgcaacttgtccaactcagctttgtcaaatacagtattccctcctttttcaaaactttagatgttagatttta 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  331 tggaactaaatttgcaacttgtccaactcagctttgtcaaatacagtattccctcctttttcaaaactttagatgttagatttta 247  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 30233031 - 30232978
Alignment:
Q  202 gattttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  30233031 gattttaggcttaattggacttttggtcccctaactagtttgttgttttcattt 30232978  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 136623 - 136671
Alignment:
Q  207 taggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  136623 taggcttaattggacttttcgtcccctaactaatttgttgtttttattt 136671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 30231475 - 30231522
Alignment:
Q  208 aggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||    
T  30231475 aggcttaattggacttttggtcccttaactaatttgttgttttcattt 30231522  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 11968599 - 11968549
Alignment:
Q  205 tttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||| ||||||||||| |||| |||||||||||||||||||||||||||||    
T  11968599 tttaagcttaattggatttttggtcccctaactaatttgttgttttcattt 11968549  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 138324 - 138278
Alignment:
Q  209 ggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  138324 ggcttaatttgacttttggtcccctaactaatttgatgttttcattt 138278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 146345 - 146299
Alignment:
Q  209 ggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  146345 ggcttaatttgacttttggtcccctaactaatttgatgttttcattt 146299  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 11967240 - 11967292
Alignment:
Q  203 attttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||| || ||||||| |||||| ||||||||| |||||||||||||||||||    
T  11967240 atttttggtttaattgtacttttggtcccctaattaatttgttgttttcattt 11967292  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 1147742 - 1147793
Alignment:
Q  204 ttttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  1147742 ttttcggcttaattggacttttggtcccctaactaatttgttgttttcattt 1147793  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 1149307 - 1149260
Alignment:
Q  208 aggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  1149307 aggcttaattggacttttggtcccctaactaatttgttgttttcattt 1149260  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 1309396 - 1309442
Alignment:
Q  209 ggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||||    
T  1309396 ggcttaattggatttttggtcccctaagtaatttgttgttttcattt 1309442  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 8320777 - 8320826
Alignment:
Q  206 ttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||||||||| ||||||||| |||||| |||||| |||||    
T  8320777 ttaggcttaattggacttttggtcccctaagtaatttcttgtttacattt 8320826  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 25561783 - 25561731
Alignment:
Q  203 attttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||| ||||| ||  ||| ||| |||||||||||||||||||||||||    
T  25561783 attttaggcgtaattcgatatttggtcgcctaactaatttgttgttttcattt 25561731  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 26146825 - 26146779
Alignment:
Q  209 ggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  26146825 ggcttaattggacttttggtcccctaactaatttgttgttttcattt 26146779  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 26135637 - 26135685
Alignment:
Q  207 taggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  26135637 taggcttaattggacttttggtcccctaactaatttgatgttttcattt 26135685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 10957271 - 10957226
Alignment:
Q  210 gcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||    
T  10957271 gcttaattggacttttggtcccctaagtaatttgttgttttcattt 10957226  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 10955842 - 10955889
Alignment:
Q  208 aggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||||||| ||||| ||| |||||||||||||||||||    
T  10955842 aggcttaattggacttttggtcccttaagtaatttgttgttttcattt 10955889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 43442885 - 43442837
Alignment:
Q  205 tttaggcttaattggacttttcgtcccctaactaatttgttgttttcat 253  Q
    |||||| ||||||| |||||| ||||||||| |||||||||||||||||    
T  43442885 tttaggtttaattgaacttttggtcccctaagtaatttgttgttttcat 43442837  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 8427005 - 8426958
Alignment:
Q  208 aggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||||||| ||||||||| ||||||  |||||||||||    
T  8427005 aggcttaattggacttttagtcccctaattaatttcatgttttcattt 8426958  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 1521315 - 1521266
Alignment:
Q  206 ttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  1521315 ttaggcttaattggacttttggtcctctaactaatttgttgttttcattt 1521266  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 1519804 - 1519855
Alignment:
Q  204 ttttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||||||||||    
T  1519804 tttttggcttaattggacttttggtcccctaactaatttgtcgttttcattt 1519855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 35350227 - 35350180
Alignment:
Q  208 aggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  35350227 aggcttaattggacttttggtcccctaagtaatttgttgttttcattt 35350180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 39057887 - 39057839
Alignment:
Q  207 taggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  39057887 taggcttaattggacttttggtcccctaagtaatttgttgtttttattt 39057839  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 35348795 - 35348841
Alignment:
Q  209 ggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||    
T  35348795 ggcttaattggacttttggtcccttaagtaatttgttgttttcattt 35348841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 39056423 - 39056469
Alignment:
Q  209 ggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||    
T  39056423 ggcttaattggacttttggtcccttaagtaatttgttgttttcattt 39056469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 26629784 - 26629835
Alignment:
Q  204 ttttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||| ||||||||||||||||| ||||| ||| ||| |||||||||||||||    
T  26629784 tttttggcttaattggacttttggtcccttaagtaaattgttgttttcattt 26629835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 26631338 - 26631291
Alignment:
Q  208 aggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||||||| |||||| || ||||||||| |||||||||    
T  26631338 aggcttaattggacttttggtcccccaagtaatttgttattttcattt 26631291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 36846674 - 36846631
Alignment:
Q  212 ttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||| | ||||||| |||||||||||||||||||    
T  36846674 ttaattggacttttggccccctaagtaatttgttgttttcattt 36846631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 28702566 - 28702613
Alignment:
Q  208 aggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  28702566 aggcttaattggactttttgtcccctaagtaatttgttgttttcattt 28702613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 41144648 - 41144590
Alignment:
Q  197 tgttagattttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||| ||||| |||||||||||| |||| ||||||||| |||||||||||||||||||    
T  41144648 tgttatatttttggcttaattggatttttggtcccctaattaatttgttgttttcattt 41144590  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 1102612 - 1102656
Alignment:
Q  205 tttaggcttaattggacttttcgtcccctaactaatttgttgttt 249  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||    
T  1102612 tttaggcttaattggacttttggtcccataactaatttgttgttt 1102656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 10735757 - 10735807
Alignment:
Q  205 tttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||||||||||||| ||||||||| |||||  ||||||||||||    
T  10735757 tttaggcttaattggacttttggtcccctaagtaattacttgttttcattt 10735807  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 1104087 - 1104047
Alignment:
Q  208 aggcttaattggacttttcgtcccctaactaatttgttgtt 248  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  1104087 aggcttaattggacttttggtcccctaagtaatttgttgtt 1104047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 10737062 - 10737010
Alignment:
Q  203 attttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||| || |||||||||||||| ||||||||| |||||| ||||||||||||    
T  10737062 atttttggtttaattggacttttggtcccctaagtaatttcttgttttcattt 10737010  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 35081557 - 35081509
Alignment:
Q  207 taggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||||||||||| ||||||||| |||||  ||||||||||||    
T  35081557 taggcttaattggacttttggtcccctaagtaattgtttgttttcattt 35081509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 13519469 - 13519516
Alignment:
Q  207 taggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||||||||||| || ||||||||||||| |||||| |||||    
T  13519469 taggcttaattggactttt-gttccctaactaatttcttgtttacattt 13519516  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 41143236 - 41143284
Alignment:
Q  207 taggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||||| ||  ||| ||||||||||||||||||| ||||    
T  41143236 taggcttaattggactcttgatcctctaactaatttgttgtttttattt 41143284  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 26286410 - 26286456
Alignment:
Q  209 ggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||    
T  26286410 ggcttaattggacttttggtcccctaactaatttgtcgttttcattt 26286456  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 26287902 - 26287856
Alignment:
Q  209 ggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||    
T  26287902 ggcttaattggacttttggtcctctaactaatttgttgttttcattt 26287856  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 5611718 - 5611770
Alignment:
Q  203 attttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||| ||||||||||||||||| ||||  |||||||||||||||||||||||    
T  5611718 atttttggcttaattggacttttggtcctttaactaatttgttgttttcattt 5611770  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 5613205 - 5613157
Alignment:
Q  207 taggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  5613205 taggcttaattggacttttgatcccctaactaatttgtcgttttcattt 5613157  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 48527529 - 48527578
Alignment:
Q  206 ttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||| |||||    
T  48527529 ttaggcttaattggatttttggtcccctaagtaatttgttgtttacattt 48527578  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 48529015 - 48528969
Alignment:
Q  209 ggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||||||||| |||||| || ||||||||||||| |||||    
T  48529015 ggcttaattggacttttggtcccccaagtaatttgttgtttacattt 48528969  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 15978888 - 15978932
Alignment:
Q  206 ttaggcttaattggacttttcgtcccctaactaatttgttgtttt 250  Q
    ||||||||||||| || ||| ||||||||||| ||||||||||||    
T  15978888 ttaggcttaattgaacctttggtcccctaactcatttgttgtttt 15978932  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 37416556 - 37416510
Alignment:
Q  209 ggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  37416556 ggcttaattggccttttggtcccctaagtaatttgttgttttcattt 37416510  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 45147272 - 45147315
Alignment:
Q  210 gcttaattggacttttcgtcccctaactaatttgttgttttcat 253  Q
    ||||||||| |||||| ||||||||||| |||||||||||||||    
T  45147272 gcttaattgaacttttggtcccctaacttatttgttgttttcat 45147315  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 43202095 - 43202140
Alignment:
Q  210 gcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||    
T  43202095 gcttaattggacttttgatcccctaagtaatttgttgttttcattt 43202140  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 24306247 - 24306197
Alignment:
Q  205 tttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    |||||||||||| |||||||| || |||||| |||||| ||||||||||||    
T  24306247 tttaggcttaataggacttttggttccctaagtaatttcttgttttcattt 24306197  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 31844366 - 31844412
Alignment:
Q  209 ggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||||||||||||||| |||||  || |||||||||||||||||||    
T  31844366 ggcttaattggacttttggtccctaaagtaatttgttgttttcattt 31844412  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 31845918 - 31845866
Alignment:
Q  203 attttaggcttaattggacttttcgtcccctaactaatttgttgttttcattt 255  Q
    ||||| |||||||||||| |||| ||||| ||| ||| |||||||||||||||    
T  31845918 atttttggcttaattggagttttggtcccttaagtaaattgttgttttcattt 31845866  T

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