View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_low_3 (Length: 853)
Name: NF8350_low_3
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 728; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 20 - 791
Target Start/End: Original strand, 47016969 - 47017740
Alignment:
| Q |
20 |
gtagggcattggatcatttgcaccaaagtgtcgtgttatcggtaattaagtttatcattttcctagatagtagaatgttatatttttcatcaatgtgcaa |
119 |
Q |
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| T |
47016969 |
gtagggcattggatcatttgcaccaaagtctcgtgttatcggtaattaagtttatcattttcctagatagtagaatgttatatttttcatcaatgtgcaa |
47017068 |
T |
|
| Q |
120 |
gtatatatcactcaacacattgtgatttcctgtatggtaggcaaaacctttgcttgatgctaataacatcaaggaccttgttgatccttctcttggagat |
219 |
Q |
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| T |
47017069 |
gtatatatcactcaacacattgtgatttcctatatggtaggcaaaacctttgcttgatgctaataacatcaaggatcttgttgatccttctcttggagat |
47017168 |
T |
|
| Q |
220 |
gattatgaccaagaacaaatggatcgtgttgttttgaccgcgtctctatgtgttgagatctctcctatcttacgccctcgcatgagtcaggcaagtatgc |
319 |
Q |
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| T |
47017169 |
gattatgaccaagaacaaatggatcgtgttgttttgaccgcgtctctatgtgttgagatctctcctatcttacgccctcgcatgagtcaggcaagtatgc |
47017268 |
T |
|
| Q |
320 |
aattaatttaatgttgaactaatgcagttagttgacttttcctgataatttttatggttgattataatgtatgtggggcccttttttcataacttaaaat |
419 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47017269 |
aattaatttaatgttgaactaatgcagttagttgactattccttataatttttatggttgattataatgtatgtggggcccttttttcataacttaaaat |
47017368 |
T |
|
| Q |
420 |
caaatcttgtttcctttgatatgccttctctattgcagaagtaaattattttgattaagtgaatcaacattacgtagtccttgaaataattggggtcaaa |
519 |
Q |
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| T |
47017369 |
caaatcttgtttcctttgatatgccttctctattgcagaagtaaattattttgattaagcgaatcaacattacgtagtccttgaaataattggggtcaaa |
47017468 |
T |
|
| Q |
520 |
caatttagatcttgaaagcaatgctatattaaaatcatttataatacttagaacactcaatcaaattagttatttttaataggttaatctagtctctgaa |
619 |
Q |
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| T |
47017469 |
caatttagatcttgaaagcaatgctattttaaaatcatttataatacttagaacactcaatcaaattagttattttgaataggttaatctagtctctgaa |
47017568 |
T |
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| Q |
620 |
attgttttaaagagaccaacttaatggaatatcttcaattttatggatcatttcaaaattttgttttcaacactaaatatttcaacttacaatttcttga |
719 |
Q |
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| T |
47017569 |
attgttttgaagagaccaacttaatggaatatcttcaattttatggatcatttcaaaattttgttttcaacactaaatatttcaacttacaatttattaa |
47017668 |
T |
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| Q |
720 |
gtcaaaaaataataaactcttataatttcagatatcattttagtgatgcatttttctattcttggagtcaac |
791 |
Q |
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| T |
47017669 |
gtcaaaaaataataaactcttataatttcagatatcattttagtgatgcatttttctattcttggagtcaac |
47017740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 801 - 840
Target Start/End: Original strand, 47017761 - 47017800
Alignment:
| Q |
801 |
ctaagcagtgaagttgcactctactccatttggtgcaggt |
840 |
Q |
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| T |
47017761 |
ctaagcagtgaagttgcactctactccatttggtgcaggt |
47017800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 150 - 310
Target Start/End: Complemental strand, 36600067 - 36599907
Alignment:
| Q |
150 |
tgtatggtaggcaaaacctttgcttgatgctaataacatcaaggaccttgttgatccttctcttggagatgattatgaccaagaacaaatggatcgtgtt |
249 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| | | |||||||||| ||| |||| ||||| |
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| T |
36600067 |
tgtatggtaggcaaaacctttgcttgatgctaataatatcaaggacgttgttgatccttctcttggaggtaactatgaccaaggacagatgggatgtgtt |
36599968 |
T |
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| Q |
250 |
gttttgaccgcgtctctatgtgttgagatctctcctatcttacgccctcgcatgagtcagg |
310 |
Q |
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| T |
36599967 |
agtttgactgcatcaatatgtgttgagcagtctcctattttacgccctcgcatgagtcagg |
36599907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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