View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_low_30 (Length: 247)
Name: NF8350_low_30
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_30 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 7309 - 7519
Alignment:
| Q |
20 |
gtaatgatgcagattcccaagccaaaggtgcaacgagtcttcttggaactccagaaggtactttacttgctactactgtaaatgataaagctgtccacac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7309 |
gtaatgatgcagattcccaagccaaaggtgcaacgagtcttcttggaactccagaaggtactttacttgctactactgtaaatgataaagctgtccacac |
7408 |
T |
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| Q |
120 |
cactaccaagaatggtactccatagtctgcaatgaaacttctcaaccaacctgctcaataaacaaacaatgtcagattccttactccaaccatggtaatg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7409 |
cactaccaagaatggtactccatagtctgcaatgaaacttctcaaccaacctgctcaataaacaaacaatgtcagattccttactccaaccatggtaatg |
7508 |
T |
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| Q |
220 |
attgatccggg |
230 |
Q |
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||||||||||| |
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| T |
7509 |
attgatccggg |
7519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 7307 - 7515
Alignment:
| Q |
20 |
gtaatgatgcagattcccaagccaaaggtgcaacgagtcttcttggaactccagaaggtactttacttgctactactgtaaatgataaagctgtccacac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7307 |
gtaatgatgcagattcccaagccaaaggtgcaacgagtcttcttggaactccagaaggtactttac--gctactactgtaaatgataaagctgtccacac |
7404 |
T |
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| Q |
120 |
cactaccaagaatggtactccatagtctgcaatgaaacttctcaaccaacctgctcaataaacaaacaatgtcagattccttactccaaccatggtaatg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7405 |
cactaccaagaatggtactccatagtctgcaatgaaacttctcaaccaacctgctcaataaacaaacaatgtcagattccttactccaaccatggtaatg |
7504 |
T |
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| Q |
220 |
attgatccggg |
230 |
Q |
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||||||||||| |
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| T |
7505 |
attgatccggg |
7515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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