View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8350_low_31 (Length: 240)

Name: NF8350_low_31
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8350_low_31
NF8350_low_31
[»] chr1 (17 HSPs)
chr1 (1-223)||(19278905-19279127)
chr1 (4-223)||(13244258-13244477)
chr1 (1-216)||(13271819-13272034)
chr1 (4-222)||(13080603-13080821)
chr1 (1-216)||(13086340-13086555)
chr1 (91-197)||(12963674-12963780)
chr1 (79-182)||(13007508-13007611)
chr1 (88-182)||(30367889-30367983)
chr1 (79-158)||(19727461-19727540)
chr1 (94-223)||(13069916-13070045)
chr1 (60-169)||(13161810-13161919)
chr1 (91-222)||(13064954-13065085)
chr1 (60-169)||(13130117-13130226)
chr1 (89-176)||(13094717-13094804)
chr1 (78-165)||(13204766-13204853)
chr1 (94-163)||(13214142-13214211)
chr1 (78-166)||(13101307-13101395)
[»] chr6 (1 HSPs)
chr6 (91-182)||(31396456-31396548)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19279127 - 19278905
Alignment:
Q  1 atagctccatgaaggtaaactagcttatcaagctctttcacactgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaa 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19279127 atagctccatgaagataaactagcttatcaagctctttcacactaaaatttgtgatcaaattatcctcttttgttaaacagttaaccttgatctcttgaa 19279028  T
Q  101 taatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagattgagagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19279027 taatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagattgagagc 19278928  T
Q  201 agtgtctctaatatacgtctcat 223  Q
    |||||||||||||||| ||||||    
T  19278927 agtgtctctaatatacatctcat 19278905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 13244477 - 13244258
Alignment:
Q  4 gctccatgaaggtaaactagcttatcaagctctttcacactgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaataa 103  Q
    ||||||||||||||||| |||||||||| || || |||  | |||||  ||||  |||| ||||||| ||||| ||| ||| | ||||||||||||||||    
T  13244477 gctccatgaaggtaaacaagcttatcaatcttttccacgtttaaattattgattaaattctcctcttgtgttagacaattatctttgatctcttgaataa 13244378  T
Q  104 tttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagattgagagcagt 203  Q
    |||| |||||  |||||||||||||||| || ||||||||||||||| | ||||| ||||||||||||||||| |||||| | |||||||| |  |||||    
T  13244377 ttttcgcttccccaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgcaccgaagagatttaccgcagt 13244278  T
Q  204 gtctctaatatacgtctcat 223  Q
    |||||| |||||| ||||||    
T  13244277 gtctctgatatacttctcat 13244258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 13271819 - 13272034
Alignment:
Q  1 atagctccatgaaggtaaactagcttatcaagctctttcacactgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaa 100  Q
    |||||| ||||||||||||  ||||||||||  | ||  ||| | |||||  ||||| |||| ||||||| ||||| ||| | | | |||||||||||||    
T  13271819 atagctgcatgaaggtaaatcagcttatcaatgttttcaacatttaaattattgatcaaattctcctcttgtgttagacaatgatctttgatctcttgaa 13271918  T
Q  101 taatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagattgagagc 200  Q
    ||| ||||||||| ||| ||||||||||||| || ||||||||||||||| | ||||| ||||||| ||||||||| ||||||||||||||| |||  ||    
T  13271919 taagttttgcttccacattaggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttccatttcctgcagccaagagagtgaatgc 13272018  T
Q  201 agtgtctctaatatac 216  Q
    ||||||||||||||||    
T  13272019 agtgtctctaatatac 13272034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 13080821 - 13080603
Alignment:
Q  4 gctccatgaaggtaaactagcttatcaagctctttcacactgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaataa 103  Q
    |||||||||||||||||||||||||||||||||| |||||  ||||| | |||  |||| || || | | ||||||| ||| | ||||||||||||||||    
T  13080821 gctccatgaaggtaaactagcttatcaagctcttccacacctaaattagcgataaaattctcatcgtgttttaaacaattatctttgatctcttgaataa 13080722  T
Q  104 tttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagattgagagcagt 203  Q
    ||||  | || ||  ||||||| ||||| || |||||||| |||||| ||||||| | ||||||||||||||| |||||| ||||||||||||  | |||    
T  13080721 ttttaccatctaccctaggatgcgttgaaaccagccaaaaaaaccaagtgagacctgtactaattgttccatttcctgcaaccaagagattgattgtagt 13080622  T
Q  204 gtctctaatatacgtctca 222  Q
     |||||||||||| |||||    
T  13080621 atctctaatatacctctca 13080603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 13086340 - 13086555
Alignment:
Q  1 atagctccatgaaggtaaactagcttatcaagctctttcacactgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaa 100  Q
    ||||||||||||||||| ||||| |||| ||||| ||  || || ||||| |||| | |||||||||| | || || ||| ||| | || ||||||||||    
T  13086340 atagctccatgaaggtacactagtttattaagcttttcaactcttaaattagtgaccaaattatcctcatgtgatagacaattatcttttatctcttgaa 13086439  T
Q  101 taatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagattgagagc 200  Q
    | ||||| ||||| || ||   ||||||||| || |||||| |||||||| | ||||| ||||||| ||||||| | |||||||| ||||||||||  ||    
T  13086440 ttattttagcttccactatgaaatgagttgaaacaagccaagagaaccaacttagacctgaactaactgttccacttcctgcagctaagagattgaatgc 13086539  T
Q  201 agtgtctctaatatac 216  Q
    ||||||||||||||||    
T  13086540 agtgtctctaatatac 13086555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 12963780 - 12963674
Alignment:
Q  91 atctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaaga 190  Q
    ||||||||||||||||| | ||| ||||||||||||||||| || ||||||||||||||| | ||||| ||||||| ||||||| | |||||||| ||||    
T  12963780 atctcttgaataattttagtttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttccacttcctgcagctaaga 12963681  T
Q  191 gattgag 197  Q
    |||||||    
T  12963680 gattgag 12963674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 13007508 - 13007611
Alignment:
Q  79 cagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattac 178  Q
    |||||| | ||||| |||||||||||||| ||||| ||||||||||||||||| || ||||| || |||||| ||||||| ||||||||||| ||||| |    
T  13007508 cagttatctttgatttcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacctgaactaattgtgccatttc 13007607  T
Q  179 ctgc 182  Q
    ||||    
T  13007608 ctgc 13007611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 30367983 - 30367889
Alignment:
Q  88 ttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgc 182  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| || ||||| || |||||| ||||||  ||||||| ||| |||||||||||    
T  30367983 ttgatctcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacttgaactaagtgtgccattacctgc 30367889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 19727461 - 19727540
Alignment:
Q  79 cagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacc 158  Q
    |||||| | ||||| |||||||||||||| |||||||||||||||||||| || || |||||||| |||||| |||||||    
T  19727461 cagttatctttgatttcttgaataattttggcttcgacaataggatgagtcgaaacaagccaaaaaaaccaactgagacc 19727540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 13070045 - 13069916
Alignment:
Q  94 tcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagat 193  Q
    |||||||||||||| ||||| ||||||||||||||||| || ||||| || |||||| ||||||| ||| ||| ||| ||||| |||||    ||||||     
T  13070045 tcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacctgaagtaactgtgccatttcctgctaaaaagagag 13069946  T
Q  194 tgagagcagtgtctctaatatacgtctcat 223  Q
     ||| ||| ||||||||| |||| ||||||    
T  13069945 agagtgcattgtctctaagatacttctcat 13069916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 13161810 - 13161919
Alignment:
Q  60 attatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagaccc 159  Q
    ||||||||||| |||||  || ||| | |||||||||||||| |||||| |||| |||||||||| |||||| | |||||| || |||||| ||||| |     
T  13161810 attatcctcttgtgttagccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaaggagccagaaaaaccaactgagagct 13161909  T
Q  160 gaactaattg 169  Q
    ||||||||||    
T  13161910 gaactaattg 13161919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 13065085 - 13064954
Alignment:
Q  91 atctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaaga 190  Q
    |||||||||||||| || ||||| |||| |||||||  ||| || ||||||||||||||| ||||||| ||||||| ||| || || || ||   ||| |    
T  13065085 atctcttgaataatcttggcttccacaacaggatgacatgaaacaagccaaaagaaccaactgagacctgaactaactgtgccgtttcccgctaacaata 13064986  T
Q  191 gattgagagcagtgtctctaatatacgtctca 222  Q
    ||||||  ||||||||||||| |||| |||||    
T  13064985 gattgactgcagtgtctctaagatacttctca 13064954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 13130117 - 13130226
Alignment:
Q  60 attatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagaccc 159  Q
    |||| |||||| |||||| || ||| | |||||||||||||| |||||| |||| |||||||||| |||||| |  ||||| || |||||| ||||| |     
T  13130117 attaccctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagct 13130216  T
Q  160 gaactaattg 169  Q
    ||||||||||    
T  13130217 gaactaattg 13130226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 13094717 - 13094804
Alignment:
Q  89 tgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccatt 176  Q
    ||||||||||||| |||||| |||| |||||||||| |||||| |  ||||| || |||||| ||||| | ||||||||||| |||||    
T  13094717 tgatctcttgaatgattttttcttccacaataggataagttgaaagaagccagaaaaaccaactgagagctgaactaattgtaccatt 13094804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 13204766 - 13204853
Alignment:
Q  78 acagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaacta 165  Q
    ||||||| | ||||| |||||||| ||||| ||||| |||||||||||||| || || |||||||| |||||| | ||||| ||||||    
T  13204766 acagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccaaaaaaaccaacttagacctgaacta 13204853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 13214142 - 13214211
Alignment:
Q  94 tcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaac 163  Q
    |||||||||||||| ||||| |||||| |||||||||| || ||||| || |||||| ||||||| ||||    
T  13214142 tcttgaataattttagcttccacaataagatgagttgaaacaagccagaaaaaccaaatgagacctgaac 13214211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 13101307 - 13101395
Alignment:
Q  78 acagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaa 166  Q
    ||||||| | ||||| |||||||| ||||| ||||| |||||||||||||| || || ||||| || |||||| ||||| | |||||||    
T  13101307 acagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccagaaaaaccaactgagagctgaactaa 13101395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 31396548 - 31396456
Alignment:
Q  91 atctcttgaataatttttgcttcgacaataggatgagttg-atacgagccaaaagaaccaattgagacccgaactaattgttccattacctgc 182  Q
    ||||||||||||||||| ||||| ||| |||||||||||| | || ||||| || ||||||  |||||  ||||||||||| ||||| |||||    
T  31396548 atctcttgaataattttggcttccacattaggatgagttgaaaacaagccagaaaaaccaaccgagacttgaactaattgtgccatttcctgc 31396456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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