View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_low_34 (Length: 222)
Name: NF8350_low_34
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 36036310 - 36036501
Alignment:
| Q |
20 |
tcaagtgtcagacacgccttcgatcagaagtgtcagtgctacaaagattcttatgctattattgtctttacctaaaccaggtgaatctcttaattcatac |
119 |
Q |
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| T |
36036310 |
tcaagtgtcagacacgccttcggtcagaagtgtcagtgctataaagattcttatgctattattgtctttacctaaaccaggtgaatctcttaattcatac |
36036409 |
T |
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| Q |
120 |
ttcatatgcgaatgccttaaagcaaaaccatcctcatccacagtctccggcaacgaaccagcaacttcttcattcctcgccgttcttctcac |
211 |
Q |
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| T |
36036410 |
ttcatatgcgaatgccttaaagcaaaaccatcctcatccacagtctgcggcaacgaaccagcaacttcttcattcctcgccgttctcctcac |
36036501 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 4785049 - 4785088
Alignment:
| Q |
28 |
cagacacgccttcgatcagaagtgtcagtgctacaaagat |
67 |
Q |
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| T |
4785049 |
cagacacgtcttcgatcagaagtgtcggtgctacaaagat |
4785088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 13635644 - 13635677
Alignment:
| Q |
28 |
cagacacgccttcgatcagaagtgtcagtgctac |
61 |
Q |
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| T |
13635644 |
cagacacgccttctatcagaagtgtcagtgctac |
13635677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 40064953 - 40064917
Alignment:
| Q |
25 |
tgtcagacacgccttcgatcagaagtgtcagtgctac |
61 |
Q |
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| T |
40064953 |
tgtcagacacgtctttgatcagaagtgtcagtgctac |
40064917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 28136285 - 28136317
Alignment:
| Q |
28 |
cagacacgccttcgatcagaagtgtcagtgcta |
60 |
Q |
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| T |
28136285 |
cagacacgtcttcgatcagaagtgtcagtgcta |
28136317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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