View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_low_39 (Length: 212)
Name: NF8350_low_39
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 1536813 - 1536991
Alignment:
| Q |
19 |
gtggtaccgatggacaatggctcggttgttattccgaaggtcttgactctaatgaaaatattaatgtcaagtatgatgataaatgttgtttaagatttac |
118 |
Q |
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| T |
1536813 |
gtggtaccgatggacaatggctcggttgttattccgaaggtcttgactctgatgaaaatattaatgtcaagtatgatgataaatgttgtttaagatttac |
1536912 |
T |
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| Q |
119 |
tggagtaggttatttaatcactggaagctggtggtgagttgaagatgctgtctaagtttgaatttggaagagtataata |
197 |
Q |
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| T |
1536913 |
tggagtaggttatttaatcactggaagctggtggtgagttgaagatgctgtctaagtttgaatttggaagagtataata |
1536991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 1532220 - 1532281
Alignment:
| Q |
52 |
ccgaaggtcttgactctaatgaaaatattaatgtcaagtatgatgataaatgttgtttaaga |
113 |
Q |
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| T |
1532220 |
ccgaaggtcttgactctaatgaaaatattaatgttaagtgtgataataaatattgtttaaga |
1532281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 3014625 - 3014727
Alignment:
| Q |
83 |
tgtcaagtatgatgataaatgttgttt-aagatttactggagtaggttatttaatcactggaagctggtggtgagttgaagatgctgtctaagtttgaat |
181 |
Q |
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| T |
3014625 |
tgtcaagtgtgataataaatgttgtttcaaggtttattggattagattatttaa-cacaggaagccagtgttgagttcaagatgctgtgtaactttgaac |
3014723 |
T |
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| Q |
182 |
ttgg |
185 |
Q |
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|||| |
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| T |
3014724 |
ttgg |
3014727 |
T |
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