View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8350_low_4 (Length: 655)

Name: NF8350_low_4
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8350_low_4
NF8350_low_4
[»] chr3 (2 HSPs)
chr3 (7-649)||(43489581-43490223)
chr3 (40-155)||(45013921-45014036)
[»] chr8 (2 HSPs)
chr8 (19-205)||(38653101-38653287)
chr8 (31-77)||(41747949-41747995)
[»] chr1 (1 HSPs)
chr1 (19-204)||(44331736-44331921)
[»] chr6 (3 HSPs)
chr6 (24-205)||(13409874-13410055)
chr6 (28-155)||(10554595-10554722)
chr6 (93-156)||(4038752-4038815)
[»] chr7 (3 HSPs)
chr7 (28-127)||(6568891-6568990)
chr7 (28-127)||(6583050-6583149)
chr7 (93-155)||(3160284-3160346)
[»] chr4 (4 HSPs)
chr4 (92-152)||(1726250-1726310)
chr4 (100-152)||(2428679-2428731)
chr4 (28-71)||(33718963-33719006)
chr4 (25-71)||(33720979-33721025)
[»] chr2 (2 HSPs)
chr2 (100-152)||(44648686-44648738)
chr2 (28-81)||(4068217-4068270)
[»] chr5 (1 HSPs)
chr5 (22-77)||(2361310-2361365)


Alignment Details
Target: chr3 (Bit Score: 611; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 7 - 649
Target Start/End: Complemental strand, 43490223 - 43489581
Alignment:
Q  7 ggagaagcagagagaaaatacagaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttag 106  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43490223 ggagaagcaaagagaaaatacagaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttag 43490124  T
Q  107 gaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaagccaaactcaatttccctgaaaatgttac 206  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43490123 gaacatttgaaacagctgaagcagctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaagccaaactcaatttccctgaaaatgttac 43490024  T
Q  207 acttcgtaaccctccaccagctactactactactcaatggaacgtttcgaattcaccgagttcgattgtttctattacaacttctactgatcctgttgtt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43490023 acttcgtaaccctccaccagctactactactactcaatggaacgtttcgaattcaccgagttcgattgtttctattacaacttctactgatcctgttgtt 43489924  T
Q  307 catactagaccttttcctaactcttctcagcattcgacaaacttttatgatcgttttcagttttcgggtattcctgctccaaggaatatttatgatgata 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||    
T  43489923 catactagaccttttcctaactcttctcagcattcgacaaacttttatgatcgttttcagttttcgggtattcctcctgcaaggaatgtttatgatgata 43489824  T
Q  407 atgtgattagggcttcttctgtggcttctcatctacaatcttcatcatcgtcgccagcttcttctttgtcatcatcttcttctgcatttgtttcttctat 506  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489823 atgtgattagggcttcttctatggcttctcatctacaatcttcatcatcgtcgccagcttcttctttgtcatcatcttcttctgcatttgtttcttctat 43489724  T
Q  507 gcagggcaatacttcagtttcctcgtatttttctactcagttgccaccttggtctacttcggatcatagctcttctccttcttgatgattaattttcaat 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43489723 gcagggcaatacttcagtttcctcgtatttttctactcagttgccaccttggtctacttcggatcagagctcttctccttcttgatgattaattttcaat 43489624  T
Q  607 gaatcagaggcaaaaacatggataccaaacacgatactgatac 649  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  43489623 gaatcacaggcaaaaacatggataccaaacacgatactgatac 43489581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 45014036 - 45013921
Alignment:
Q  40 cagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaagctgctgctagag 139  Q
    ||||| ||||||||||| ||||| ||||||||  | |||||    || || ||||| |||||| |||||||||||||||| ||||| ||||| ||    |    
T  45014036 cagaggccatggggaaagtgggctgcagagattcgtgatccgaagaaggcggcaagggtatggctaggaacatttgaaacggctgaggctgcagccgttg 45013937  T
Q  140 catatgatgaagctgc 155  Q
    ||||||||||||||||    
T  45013936 catatgatgaagctgc 45013921  T

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Target: chr8 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 38653287 - 38653101
Alignment:
Q  19 agaaaatacagaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaa 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||    
T  38653287 agaaaatacagaggagtaagacagaggccatggggaaaatgggcagcagagataagagatcctttcaaagctacaagagtatggttaggtacatttgaaa 38653188  T
Q  119 cagctgaagctgctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaagccaaactcaatttccctgaaaatgtta 205  Q
    ||||||||| ||| |||| ||| |||||| ||||| |  | ||||||||||| |||||||| |||||||| ||||||||||||||||    
T  38653187 cagctgaagatgcagctaaagcctatgatcaagcttcattgcgttttagaggaaacaaagcaaaactcaacttccctgaaaatgtta 38653101  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 41747949 - 41747995
Alignment:
Q  31 ggagtaagacagagaccatggggaaaatgggcagcagagataagaga 77  Q
    ||||| ||||||||||| |||||||||||||| || |||||||||||    
T  41747949 ggagtgagacagagaccttggggaaaatgggcggcggagataagaga 41747995  T

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Target: chr1 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 44331921 - 44331736
Alignment:
Q  19 agaaaatacagaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaa 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||  ||||||||||||||||||| | |||||||||||||    
T  44331921 agaagatacagaggagtaagacagagaccatggggaaaatgggcagcagaaattcgagatccacacaaagcagcaagagtatggcttggaacatttgaaa 44331822  T
Q  119 cagctgaagctgctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaagccaaactcaatttccctgaaaatgtt 204  Q
    | || |||||||| || ||||| || |||||||||||  |  | || ||||| |||| ||| |||||||| |||||||||||||||    
T  44331821 ctgcagaagctgcagcaagagcttacgatgaagctgcattaagattcagaggaaacagagcgaaactcaacttccctgaaaatgtt 44331736  T

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Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 13409874 - 13410055
Alignment:
Q  24 atacagaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagct 123  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||  |||||||  |||||||||| |||||||||| || |||||     
T  13409874 atacagaggagtgagacaaagaccatggggaaaatgggcagcagaaataagagatccacacaaagcacaaagagtatggctaggaacattcgacacagca 13409973  T
Q  124 gaagctgctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaagccaaactcaatttccctgaaaatgtta 205  Q
    |||||||| ||||| || ||||||||||||||  |  | || ||||| | || ||| |||||||| ||||||||||||||||    
T  13409974 gaagctgcagctagggcttatgatgaagctgcattgagattcagaggaagcagagcaaaactcaacttccctgaaaatgtta 13410055  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 10554595 - 10554722
Alignment:
Q  28 agaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaag 127  Q
    ||||| ||||| || ||||| ||||| ||||||||||| || |||||||||||    |||| ||||||||| ||| | || || ||||||||||||||||    
T  10554595 agaggtgtaaggcaaagaccttgggggaaatgggcagctgaaataagagatcctaaaaaaggagcaagagtgtggcttggcacctttgaaacagctgaag 10554694  T
Q  128 ctgctgctagagcatatgatgaagctgc 155  Q
    |||| ||||  || ||||||||||||||    
T  10554695 ctgcagctactgcttatgatgaagctgc 10554722  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 4038752 - 4038815
Alignment:
Q  93 aagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgct 156  Q
    |||||| ||||||||||| ||||| ||||||||||  ||||||||||| |||||||| ||||||    
T  4038752 aagagtttggttaggaacttttgatacagctgaagaagctgctagagcttatgatgaggctgct 4038815  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 6568891 - 6568990
Alignment:
Q  28 agaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaag 127  Q
    |||||||| ||||||||||||||||||||||||||||| || ||| | || |||   |||||||| ||||| ||||||||||||||||| ||||||||||    
T  6568891 agaggagtgagacagagaccatggggaaaatgggcagctgaaatacgtgacccaaaaaaagcagctagagtttggttaggaacatttgatacagctgaag 6568990  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 6583050 - 6583149
Alignment:
Q  28 agaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagctgaag 127  Q
    |||||||| ||||| ||||||||||||||||||||||| || ||| | || |||   |||||||| ||||| ||||||||||||||||| ||||||||||    
T  6583050 agaggagtgagacaaagaccatggggaaaatgggcagctgaaatacgtgacccaaaaaaagcagctagagtttggttaggaacatttgacacagctgaag 6583149  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 3160284 - 3160346
Alignment:
Q  93 aagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagctgc 155  Q
    |||||| ||||||||||| ||||| ||||||||||  ||||| ||||| ||||||||||||||    
T  3160284 aagagtttggttaggaacttttgatacagctgaagaagctgcaagagcctatgatgaagctgc 3160346  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 1726250 - 1726310
Alignment:
Q  92 caagagtatggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagc 152  Q
    ||||| ||||||||||||||||||||||||| |||| ||| || |||||||||||||||||    
T  1726250 caagaatatggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagc 1726310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 2428731 - 2428679
Alignment:
Q  100 tggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagc 152  Q
    ||||||||||||||||| ||||||||||  || ||||||||||||||||||||    
T  2428731 tggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagc 2428679  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 33718963 - 33719006
Alignment:
Q  28 agaggagtaagacagagaccatggggaaaatgggcagcagagat 71  Q
    |||||||| |||||||||||||||||||||||||| || |||||    
T  33718963 agaggagtgagacagagaccatggggaaaatgggctgctgagat 33719006  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 33720979 - 33721025
Alignment:
Q  25 tacagaggagtaagacagagaccatggggaaaatgggcagcagagat 71  Q
    ||||||||||| || ||||||||||||||||||||||| || |||||    
T  33720979 tacagaggagtgaggcagagaccatggggaaaatgggctgctgagat 33721025  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 44648738 - 44648686
Alignment:
Q  100 tggttaggaacatttgaaacagctgaagctgctgctagagcatatgatgaagc 152  Q
    ||||||||||||||||||||||||||||  || |||| |||||||||||||||    
T  44648738 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 44648686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 4068270 - 4068217
Alignment:
Q  28 agaggagtaagacagagaccatggggaaaatgggcagcagagataagagatcca 81  Q
    |||||||||||| ||||||||||||||| ||  || || |||||||||||||||    
T  4068270 agaggagtaagaaagagaccatggggaagatacgccgcggagataagagatcca 4068217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 2361365 - 2361310
Alignment:
Q  22 aaatacagaggagtaagacagagaccatggggaaaatgggcagcagagataagaga 77  Q
    |||||| | ||||| || ||||||||||||||||||||||| || |||||||||||    
T  2361365 aaataccgtggagtgaggcagagaccatggggaaaatgggcggcggagataagaga 2361310  T

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