View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8350_low_41 (Length: 201)
Name: NF8350_low_41
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 1330395 - 1330229
Alignment:
| Q |
18 |
gtaaggagggtggatgaattggtggaggaagtgaaggtcttggaggtgggtgttggatagaactaaagtgtcggcatgtttattctatgaatggtgttgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1330395 |
gtaaggagggtggatgaattggtggaggaagtgaaggtcttggagttgggtgttggatagaactaaagtgtcggcatgtttattctatgaatggtgttgg |
1330296 |
T |
|
| Q |
118 |
aacccaaaaggatgccttacctgataattggagttttttctcgagtttctgtgtatattgacagcgc |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1330295 |
aacccaaaaggatgccttacctgataattggagttttttctcgagtttctgtgtatattgacagcgc |
1330229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 29083197 - 29083229
Alignment:
| Q |
103 |
tatgaatggtgttggaacccaaaaggatgcctt |
135 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
29083197 |
tatgaatggtgttggaacccaaaagaatgcctt |
29083229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 14247612 - 14247440
Alignment:
| Q |
18 |
gtaaggagggtggatgaattggtggaggaagtgaaggt-----cttggaggtgggtgttggatagaactaaagtgtcggcatgtttattctatgaatggt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | ||||| ||||||||||||| |
|
|
| T |
14247612 |
gtaaggagggtggatgaattggtggaggaagtgaaggtactgtcttggaggtgggtgttggatagaactaaagtgccaacgtgtttgttctatgaatggt |
14247513 |
T |
|
| Q |
113 |
gttggaacccaaaaggatgccttacctgataattgga-gttttttctcgagtttctgtgtatattgacagcgc |
184 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||| |||||| |||||||||| ||| ||||||||||||| |
|
|
| T |
14247512 |
gttggaacccaaaagaatgccttatgcgataagtggaggtttttcctcgagtttcagtgaatattgacagcgc |
14247440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 9850424 - 9850340
Alignment:
| Q |
101 |
tctatgaatggtgttggaacccaaaaggatgccttacctgataattggagtttttt-ctcgagtttctgtgtatattgacagcgc |
184 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||| ||| ||||||| ||||| |
|
|
| T |
9850424 |
tctatgaatggtgttggaacccaaaagaatgccttatgcgataagtggagttttttcctcgagtttcagtgaatattgatagcgc |
9850340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 7701561 - 7701528
Alignment:
| Q |
94 |
tgtttattctatgaatggtgttggaacccaaaag |
127 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
7701561 |
tgtttattctatgaatgatgttggaacccaaaag |
7701528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University