View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_low_5 (Length: 584)
Name: NF8350_low_5
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 9e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 22622029 - 22621808
Alignment:
| Q |
18 |
ttcttactttgttaacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgtttttacttctggttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22622029 |
ttcttactttgttaacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgtttttacttctggttga |
22621930 |
T |
|
| Q |
118 |
tgtttgtgtcttgttatggaatttaggtagagcttattacctcaaactctctcattcttcaggttgtctaattttgttgtgttcaaatttagaccttgtt |
217 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22621929 |
tgtttgtgtcttgt-------------tagagattattacctcaaactctctcattcttcaggttgtctaattttgttgt-----aatttagaccttgtt |
22621848 |
T |
|
| Q |
218 |
aatcaagataccaactaatctgtataaattttaattgtga |
257 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| |
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| T |
22621847 |
aatcaagataccaactaatctgtataaattgtaattgtga |
22621808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 20011914 - 20011693
Alignment:
| Q |
18 |
ttcttactttgttaacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgtttttacttctggttga |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20011914 |
ttcttactttgttaacaacagaaagatctagagataatacagtggcaagagatagttattactttcatcggttactccatttgtttttacttctggttga |
20011815 |
T |
|
| Q |
118 |
tgtttgtgtcttgttatggaatttaggtagagcttattacctcaaactctctcattcttcaggttgtctaattttgttgtgttcaaatttagaccttgtt |
217 |
Q |
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| T |
20011814 |
tgtttgtgtcttgt-------------tagagattattacctcaaactctctcattcttcaggttgtctaattttgttgt-----aatttagaccttgtt |
20011733 |
T |
|
| Q |
218 |
aatcaagataccaactaatctgtataaattttaattgtga |
257 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |
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| T |
20011732 |
aatcaagataccaactaatctgtataaattgtaattgtga |
20011693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 265 - 435
Target Start/End: Complemental strand, 2465701 - 2465531
Alignment:
| Q |
265 |
caaatataccaataacacgaattgaagcaaactaagctagaaaaccccaaaatgtgtgacttaccgccgaacagaacaaatcaaccaaactccaccaaag |
364 |
Q |
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| T |
2465701 |
caaatataccaataacacgaattgaagcaaactaagctagaaaaccccaaaatgtgtgacttaccaccgaacagaacaaatcaaccaaactccaccaaag |
2465602 |
T |
|
| Q |
365 |
aagaggattgccagaagcgatgacagtcgttgaaggaaccgaaccaaggaggttcaatttctgttcatcgt |
435 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2465601 |
aagaggattgccagaagcgaggacagtcgttgaaggaaccgaaccaaggaggttcaattgctgttcatcgt |
2465531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 2467066 - 2466891
Alignment:
| Q |
13 |
tattattcttactttgttaacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgtttttacttctg |
112 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467066 |
tattattcttactttgttaacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgtttttacttctg |
2466967 |
T |
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| Q |
113 |
gttgatgtttgtgtcttgttatggaat----ttaggtagagcttattacctcaaactctctcattcttcaggttgt |
184 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2466966 |
gttgatgtttgtgtcttgttatggaatttaattaggtagagcttattacctcaaactctctaattcttcaggttgt |
2466891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 455 - 568
Target Start/End: Complemental strand, 2465541 - 2465428
Alignment:
| Q |
455 |
ctgttcattgttttcgccatctactgttcctcgctctcgtaagttacgtttccattcactctctcactggaaattggaaagagctcatctcgggaaaatc |
554 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
2465541 |
ctgttcatcgttttcgccatctactgttcatcgctctcgtaagttacgtttccattcactctctcactggaaattggaaagaggtcatctcggaaaaatc |
2465442 |
T |
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| Q |
555 |
tgcaatccaaatat |
568 |
Q |
| |
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| |||||||||||| |
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| T |
2465441 |
tacaatccaaatat |
2465428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 43692815 - 43692743
Alignment:
| Q |
19 |
tcttactttgttaacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggtta |
91 |
Q |
| |
|
||||||||||||||||| |||||| |||||||| ||| || ||| ||| |||| || ||||||||| ||||| |
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| T |
43692815 |
tcttactttgttaacaatagaaagctctaaagaaaattcaacggccagatatagctactactttcattggtta |
43692743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 9e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 15157506 - 15157284
Alignment:
| Q |
18 |
ttcttactttgttaacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgtttttacttctggttga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
15157506 |
ttcttactttgttaacaacagaaagatctaaagttaatacagcggcaagagatagttattactttcatcggttactccatttgtct------------ga |
15157419 |
T |
|
| Q |
118 |
tgtttgtgtcttgttatggaatttaggtagagcttattacctcaaactctctcattcttcaggttgtctaattttgttgtgttcaaatttagaccttgtt |
217 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15157418 |
tgtttgtgtcttgttatggaatttaggtagagattattacctcaaactctctcattcttcaggttgtctaattttgttgt-----aatttagaccttgtt |
15157324 |
T |
|
| Q |
218 |
aatcaagataccaactaatctgtataaattttaattgtga |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
15157323 |
aatcaagataccaactaatctgtataaattttaattgtga |
15157284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 8e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 25548622 - 25548839
Alignment:
| Q |
18 |
ttcttactttgttaacaacagaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgtttttacttctggttga |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25548622 |
ttcttactttgttaacaacaaaaagatctaaagataatacagtggcaagagatagttattactttcatcggttactccatttgttt----ttctggttga |
25548717 |
T |
|
| Q |
118 |
tgtttgtgtcttgttatggaatttaggtagagcttattacctcaaactctctcattcttcaggttgtctaattttgttgtgttcaaatttagaccttgtt |
217 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
25548718 |
tgtttgtgtcttgt-------------tagagattattacctcaaactctctcattcttcaggttgtctaattttgttgt-----aatttagaccttttt |
25548799 |
T |
|
| Q |
218 |
aatcaagataccaactaatctgtataaattttaattgtga |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
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| T |
25548800 |
aatcaagataccaactaatctgtataaattgtaattgtga |
25548839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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