View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_low_6 (Length: 517)
Name: NF8350_low_6
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 500
Target Start/End: Complemental strand, 48894608 - 48894121
Alignment:
| Q |
20 |
caagattcccacttaattctcccacctaccatcaacattatgcttccattcctcacttttctggctccttgctcgatgtcgttcttgactatacagaagc |
119 |
Q |
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| T |
48894608 |
caagattcccacttaattctcccacctaccatcaacattatgcttccattcctcacttttctggctccttgctcgatgtcgttcttgactatacagaagc |
48894509 |
T |
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| Q |
120 |
cattcaagccaaggtagttgctacttcctaccttgcttaattacagatattatttatttcctctcatatttgaaccggtaattttttatgataacaattt |
219 |
Q |
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| T |
48894508 |
cattcaagccaaggtagttgctacttcctaccttgcttaattacagatattatttatttcctctcatatttgaaccggtaattttttatgataacaattt |
48894409 |
T |
|
| Q |
220 |
gtattagaatttattggccttcacttgtgtgtttttggtgattgttctactgaccacatcttcctactcnnnnnnncttatcctctggtccnnnnnnngg |
319 |
Q |
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| T |
48894408 |
gtattagaatttattggccttcacttgtgtgtttttggtgattgttctaatgaccacatcttcctactctttttttcttatcctctggtcctttttttgg |
48894309 |
T |
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| Q |
320 |
taaggttgaacaacatgaagaacttatttagagcaattatctg----------nnnnnnnnnatacctatgcatgtgtatgtgtatgnnnnnnnnngttg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
48894308 |
taaggttgaacaacatgaagaacttatttagagcaattatctgtgttttttttttcttttttttacctatgcatgtgtatgtgtatgttttttt---ttg |
48894212 |
T |
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| Q |
410 |
ttaaatagccggaattcaacnnnnnnnnnaaggtgaataagttgggatttaaggtttgaactccgacccctatatataacaatgcatgttc |
500 |
Q |
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| T |
48894211 |
tcaaatagccggaattcaactttttttttaaggtgaataagttggtatttgaggttcgaactccgacccctatatataacaatgcatgttc |
48894121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 498
Target Start/End: Complemental strand, 4985819 - 4985783
Alignment:
| Q |
462 |
ggtttgaactccgacccctatatataacaatgcatgt |
498 |
Q |
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|||| |||| ||||||||||||||||||||||||||| |
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| T |
4985819 |
ggttcgaaccccgacccctatatataacaatgcatgt |
4985783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 498
Target Start/End: Complemental strand, 17557090 - 17557054
Alignment:
| Q |
462 |
ggtttgaactccgacccctatatataacaatgcatgt |
498 |
Q |
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| T |
17557090 |
ggtttgaaccccgacccctacatataacaatgcatgt |
17557054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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