View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8350_low_9 (Length: 418)
Name: NF8350_low_9
Description: NF8350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8350_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 6 - 403
Target Start/End: Complemental strand, 53048333 - 53047937
Alignment:
| Q |
6 |
atgttaaaatcatctgagataaaagtcagaagagtattttcgtgtctatatcatgcaagttttttaataagttaggaacaatattattatttatttagtg |
105 |
Q |
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| T |
53048333 |
atgttaaaatcatctgagataaaagtcagaagagtattttcgtgtctatatcatgcaagttttttaataagttaggaacaatattat-atttatttagtg |
53048235 |
T |
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| Q |
106 |
ggaggcactagaccatgcacgcctcaacgaggatttgaattttaagtcccttcagaaaacaaagctaggcaatcaccaccactaagctagcacacaacat |
205 |
Q |
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| T |
53048234 |
ggaggcactagaccatgcacgcctcaacgaggatttgaattttaagtcccttcagaaaacaaagctaggcaatcaccaccactaagctagcacacaacat |
53048135 |
T |
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| Q |
206 |
gcaagtgtggtctgatttggacacacataatacaaacgcaatactcatgattgtaaaggcagcattgacttgatgacttacaaccaaaggtggagtgccc |
305 |
Q |
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| T |
53048134 |
gcaagtgtggtctgatttggacacacataatacaaacgcaatactcatgattgtaaaggcagcattgacttgatgacttacaaccaaaggtggagtgccc |
53048035 |
T |
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| Q |
306 |
ccatttttcatgattgcaagcttcctttgatatgagtttcccagcatctgccataaaaaggaattctcaattgtcagaactttaagactattggaagt |
403 |
Q |
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| T |
53048034 |
ccatttttcatgattgcaagcttcctttgatatgagtttcccagcatctgccgtaaaaaggaattctcaattgtcagaactttaagactattggaagt |
53047937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 15958003 - 15958077
Alignment:
| Q |
282 |
cttacaaccaaaggtggagtgcccccatttttcatgattgcaagcttcctttgatatgagtttcccagcatctgc |
356 |
Q |
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| T |
15958003 |
cttacatccaatggtgcagtccccccatttttcacaattttaagcttcctttgaaatgagttccccaacatctgc |
15958077 |
T |
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