View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8351_high_1 (Length: 677)

Name: NF8351_high_1
Description: NF8351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8351_high_1
NF8351_high_1
[»] chr5 (5 HSPs)
chr5 (1-527)||(28532509-28533029)
chr5 (525-643)||(28533069-28533187)
chr5 (63-118)||(29021558-29021613)
chr5 (66-119)||(28673512-28673565)
chr5 (313-358)||(41900503-41900548)
[»] chr6 (14 HSPs)
chr6 (1-174)||(6588466-6588636)
chr6 (61-172)||(6416827-6416938)
chr6 (527-601)||(6587982-6588056)
chr6 (311-369)||(6593929-6593987)
chr6 (399-496)||(6588144-6588241)
chr6 (313-369)||(6423907-6423963)
chr6 (315-368)||(6410699-6410752)
chr6 (611-657)||(14810035-14810081)
chr6 (315-369)||(19633104-19633158)
chr6 (311-368)||(6417092-6417149)
chr6 (312-361)||(6596241-6596290)
chr6 (329-370)||(7132323-7132364)
chr6 (329-370)||(7135246-7135287)
chr6 (329-370)||(7138169-7138210)
[»] chr3 (7 HSPs)
chr3 (61-172)||(13469859-13469970)
chr3 (533-643)||(51763081-51763191)
chr3 (311-369)||(51763388-51763446)
chr3 (61-183)||(51763574-51763696)
chr3 (312-369)||(51113195-51113252)
chr3 (66-111)||(513925-513970)
chr3 (251-283)||(51763498-51763530)
[»] chr1 (3 HSPs)
chr1 (72-183)||(19467621-19467732)
chr1 (311-375)||(7555198-7555262)
chr1 (313-370)||(19467428-19467485)
[»] chr4 (10 HSPs)
chr4 (72-172)||(21833493-21833593)
chr4 (311-370)||(553759-553818)
chr4 (610-657)||(1537252-1537299)
chr4 (311-366)||(21833278-21833333)
chr4 (564-661)||(53759964-53760058)
chr4 (71-160)||(532589-532681)
chr4 (605-657)||(1547374-1547426)
chr4 (61-159)||(53761012-53761110)
chr4 (252-289)||(7225253-7225290)
chr4 (251-291)||(53760907-53760947)
[»] chr7 (9 HSPs)
chr7 (72-166)||(10615459-10615553)
chr7 (311-370)||(10615713-10615772)
chr7 (608-657)||(15091285-15091334)
chr7 (310-370)||(10169047-10169107)
chr7 (251-295)||(10169137-10169181)
chr7 (310-370)||(10176572-10176632)
chr7 (251-295)||(10176662-10176706)
chr7 (617-661)||(10167233-10167277)
chr7 (625-657)||(10616213-10616245)
[»] chr8 (4 HSPs)
chr8 (312-356)||(32151969-32152013)
chr8 (66-119)||(18314876-18314929)
chr8 (252-280)||(18314740-18314768)
chr8 (320-368)||(34935986-34936034)


Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 28532509 - 28533029
Alignment:
Q  1 tctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgctgaacaagtggaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532509 tctcacggagagcagaagcaatgcctgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgctgaacaagtggaa 28532608  T
Q  101 aagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcctctatcccattgttataactacgagtc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||     
T  28532609 aagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgtgaagtgaaagtgagagagcctctaccccattgttataactacgagtt 28532708  T
Q  201 cgagtctctatcatagagatataatttaaggggtatttaagtatgaggtcgaggtcgagttcttcgagcaaagggaaacattctgcgataagaaataggt 300  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||      |||||||||||||||||||||||||||||||||||||    
T  28532709 cgagtctctatcatagagatataatttaaggggtattttagtctgaggtcgaggtcg------tcgagcaaagggaaacattctgcgataagaaataggt 28532802  T
Q  301 taacaaagccggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctgggaagcggttaccaacgtttgggagttt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28532803 taacaaagccggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctgggaagcggttaccaacgtttggaagttt 28532902  T
Q  401 gagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttgtgaccgagatagcgagagagattgagggaattgagatgg 500  Q
    ||||||| ||| |||||| |||| ||||   ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||    
T  28532903 gagtgaaatgattttgaatgacgggaaatctgagatttggcagagaaggtcgtcgaggttgttacctagatagcgagagagatcgaggaaattgagatgg 28533002  T
Q  501 gtgaaccttttgaagaggctacgtagg 527  Q
    ||||||||||||||||||||| |||||    
T  28533003 gtgaaccttttgaagaggctaagtagg 28533029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 525 - 643
Target Start/End: Original strand, 28533069 - 28533187
Alignment:
Q  525 aggcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc 624  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28533069 aggcgtccggtgatggagaggaaccgtttggatacggtggagagagaactcaagttgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc 28533168  T
Q  625 tgaatatacattcccaaca 643  Q
    |||| ||||||||||||||    
T  28533169 tgaagatacattcccaaca 28533187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 29021558 - 29021613
Alignment:
Q  63 acttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgat 118  Q
    ||||||| |||||||||||||||| | |  ||||||||||||||||||| ||||||    
T  29021558 acttcttcgagaagcttacagttgtttataaagtggaaaagtgattggtcgttgat 29021613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 28673565 - 28673512
Alignment:
Q  66 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 119  Q
    |||| |||||||||||||||| | | ||| |||||||||||||||| |||||||    
T  28673565 tcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtcgttgatg 28673512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 41900548 - 41900503
Alignment:
Q  313 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcg 358  Q
    ||||||||| |||||||||||||||||| ||||  |||||||||||    
T  41900548 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcg 41900503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 4e-37; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 6588636 - 6588466
Alignment:
Q  1 tctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgctgaacaagtggaa 100  Q
    ||||||||||||||||||||||| |||||| |||||||    |   | |||||   ||||||||||| |||||||||||||| ||| |||||||||||||    
T  6588636 tctcacggagagcagaagcaatgcctgcattggttaattcacg---acaaccaaatatgttgacttcctggagaagcttacaattgttgaacaagtggaa 6588540  T
Q  101 aagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcct 174  Q
    ||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||  |||||||||||||    
T  6588539 aagcgattgattgttgatgggaaagtaagaaagattaaccttgcgaagtttgaaaagtgcgagtgagagagcct 6588466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 172
Target Start/End: Original strand, 6416827 - 6416938
Alignment:
Q  61 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 160  Q
    ||||||||| ||||||||||||||||  ||| || |||||||| ||||||||||| |  |||||   |||||||||||| ||||||||||| | |||||     
T  6416827 tgacttcttcgagaagcttacagttgtggaataactggaaaagggattggttgtttacaggaaatctagaaagattaactttgcggagtttaaaaagtgc 6416926  T
Q  161 aagtgagagagc 172  Q
    |||||| |||||    
T  6416927 aagtgatagagc 6416938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 527 - 601
Target Start/End: Complemental strand, 6588056 - 6587982
Alignment:
Q  527 gcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtc 601  Q
    |||| ||||||||| ||||||| | |||||||||| |||||||||| ||| |||| |||||||||||||||||||    
T  6588056 gcggtcggtgatggcgaggaactgcttggatacggcggagagagaaatcatgctgtgacggttgttgttttcgtc 6587982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 6593987 - 6593929
Alignment:
Q  311 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 369  Q
    ||||||| |||||||||||||||||||||| |||||||| ||| ||||||| |||||||    
T  6593987 ggaacaattgaaagaggtcaaagttgtaatcttttgtgagaaaactcgcaaaccatttg 6593929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 399 - 496
Target Start/End: Complemental strand, 6588241 - 6588144
Alignment:
Q  399 ttgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttgtgaccgagatagcgagagagattgagggaattgag 496  Q
    ||||||||||||| ||| || |  | |||||||||||||||||| ||||||||||||||||  | ||||  ||| || ||||||||||||||| ||||    
T  6588241 ttgagtgaagtgattttcaatgttgggaaacgagagatttggcaaagaaggtcgtcgaggtcataaccgctatatcgcgagagattgagggaagtgag 6588144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 313 - 369
Target Start/End: Original strand, 6423907 - 6423963
Alignment:
Q  313 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 369  Q
    ||||||||| ||||||||||||||| |||||||| || ||||||||||| |||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttg 6423963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 6410699 - 6410752
Alignment:
Q  315 caagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 368  Q
    |||||||||||||||||||||||||||||||| || ||| || |||| ||||||    
T  6410699 caagtgaaagaggtcaaagttgtaatgttttgggagaaaacttgcaacccattt 6410752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 657
Target Start/End: Original strand, 14810035 - 14810081
Alignment:
Q  611 gttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 657  Q
    ||||||||||||||| || | || |||||||||||||||||||||||    
T  14810035 gttgatgatgaatctaaagacacgttcccaacactcatcaggtaaat 14810081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 19633104 - 19633158
Alignment:
Q  315 caagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 369  Q
    ||||||| ||||||||||||||||||| |||  || ||||||||||| |||||||    
T  19633104 caagtgagagaggtcaaagttgtaatgctttcggagaaagctcgcaacccatttg 19633158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 368
Target Start/End: Original strand, 6417092 - 6417149
Alignment:
Q  311 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 368  Q
    ||||||||||| |||||||||||||||| | ||||| || |||||||| || ||||||    
T  6417092 ggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccattt 6417149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 6596290 - 6596241
Alignment:
Q  312 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaa 361  Q
    |||||||||| ||||||||||||||| |||||||| || ||| |||||||    
T  6596290 gaacaagtgagagaggtcaaagttgttatgttttgggagaaaactcgcaa 6596241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 7132323 - 7132364
Alignment:
Q  329 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 370  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7132364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 7135246 - 7135287
Alignment:
Q  329 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 370  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7135287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 7138169 - 7138210
Alignment:
Q  329 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 370  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7138210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 61 - 172
Target Start/End: Complemental strand, 13469970 - 13469859
Alignment:
Q  61 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 160  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||| ||||||| || |||||   |||||||||||||||||||||||| | |||||     
T  13469970 tgacttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtttataggaaaactagaaagattaaccttgcggagtttaaaaagtgc 13469871  T
Q  161 aagtgagagagc 172  Q
    |||||| |||||    
T  13469870 aagtgatagagc 13469859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 533 - 643
Target Start/End: Complemental strand, 51763191 - 51763081
Alignment:
Q  533 ggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatata 632  Q
    |||||||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||||||| | ||||||   | | | ||||||||||||| |||| |||    
T  51763191 ggtgatggagaggaactgtttggaaacgatggagagagaattcaagttgcgacggttgttttcttcgtcatcatcattgttgatgatgaatttgaagata 51763092  T
Q  633 cattcccaaca 643  Q
     ||||||||||    
T  51763091 gattcccaaca 51763081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 51763446 - 51763388
Alignment:
Q  311 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 369  Q
    ||||||||||| ||| |||||||||||||| |||||||||||| ||||||| |||||||    
T  51763446 ggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttg 51763388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 183
Target Start/End: Complemental strand, 51763696 - 51763574
Alignment:
Q  61 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 160  Q
    |||| ||||||||||||||||||||||  |  | ||||||||| ||||| ||||| |||||| ||  ||||| ||||||||| || ||||||| ||| |     
T  51763696 tgacatcttggagaagcttacagttgcatagaaggtggaaaagcgattgattgtttatgggacagccagaaaaattaaccttacgcagtttgaaaagagc 51763597  T
Q  161 aagtgagagagcctctatcccat 183  Q
    |||||| || || | ||||||||    
T  51763596 aagtgaaagtgcttgtatcccat 51763574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 51113252 - 51113195
Alignment:
Q  312 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 369  Q
    |||||||||| |||||||| ||||||||| ||||  || |||||||||||||||||||    
T  51113252 gaacaagtgagagaggtcagagttgtaatattttccgagaaagctcgcaatccatttg 51113195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 513970 - 513925
Alignment:
Q  66 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggt 111  Q
    ||||| ||||||||||||||  |||||||||||||||| |||||||    
T  513970 tcttgaagaagcttacagtttttgaacaagtggaaaagcgattggt 513925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 51763530 - 51763498
Alignment:
Q  251 gaggtcgagttcttcgagcaaagggaaacattc 283  Q
    ||||||||||||||||||||| |||||||||||    
T  51763530 gaggtcgagttcttcgagcaatgggaaacattc 51763498  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 19467732 - 19467621
Alignment:
Q  72 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 171  Q
    ||||||||||| ||| | |||||||| ||||  |||| || | | |||||||||  |||||||||||||||||||||||||||||||| |||||| ||||    
T  19467732 agaagcttacaattgttaaacaagtgaaaaatcgatttgtcgctcatgggaaagccagaaagattaaccttgcggagtttgagaagtgcaagtgaaagag 19467633  T
Q  172 cctctatcccat 183  Q
    |||||| |||||    
T  19467632 cctctaccccat 19467621  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 311 - 375
Target Start/End: Original strand, 7555198 - 7555262
Alignment:
Q  311 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctggga 375  Q
    |||||||||||  ||||| ||||||||||| ||||| || ||||||||||||||| |||| ||||    
T  7555198 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcaggga 7555262  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 370
Target Start/End: Complemental strand, 19467485 - 19467428
Alignment:
Q  313 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 370  Q
    ||||||||| |||||||||||||||||| ||||| |  ||| ||||||| ||||||||    
T  19467485 aacaagtgagagaggtcaaagttgtaatattttgagtgaaaactcgcaacccatttgc 19467428  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 21833593 - 21833493
Alignment:
Q  72 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 171  Q
    ||||||||||| ||  | | |||||||||||| ||||| ||||| |||||||||  |||||||||||||||||||||||||| ||||| |||||| ||||    
T  21833593 agaagcttacaattctttagcaagtggaaaagagattgattgtttatgggaaagccagaaagattaaccttgcggagtttgataagtgcaagtgaaagag 21833494  T
Q  172 c 172  Q
    |    
T  21833493 c 21833493  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 311 - 370
Target Start/End: Original strand, 553759 - 553818
Alignment:
Q  311 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 370  Q
    |||||| |||| |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  553759 ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgc 553818  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 610 - 657
Target Start/End: Complemental strand, 1537299 - 1537252
Alignment:
Q  610 cgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 657  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  1537299 cgttgttgaggaatctgaatacacattcccaacactcatcaggtaaat 1537252  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 21833333 - 21833278
Alignment:
Q  311 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccat 366  Q
    ||||||||||| |||||||||||| ||||||||||||| |||| ||||||| ||||    
T  21833333 ggaacaagtgagagaggtcaaagtagtaatgttttgtgcaaaaactcgcaacccat 21833278  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 564 - 661
Target Start/End: Complemental strand, 53760058 - 53759964
Alignment:
Q  564 gagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaatctga 661  Q
    ||||||||| ||||| || ||||||||||||||| |||| |   || |||||||| || | |||| ||| ||||||| ||||||||||||||||||||    
T  53760058 gagagagaattcaagttgtgacggttgttgtttttgtcctt---gttgttgatgacgagtttgaagatagattcccagcactcatcaggtaaatctga 53759964  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 532589 - 532681
Alignment:
Q  71 gagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg--ggaaag-gaagaaagattaaccttgcggagtttgagaagtga 160  Q
    |||||||||||| ||  |||||||||||||||| ||||||| |||||||  |  | | | |||||||||||||||||||||||||| ||||||    
T  532589 gagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtga 532681  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 657
Target Start/End: Complemental strand, 1547426 - 1547374
Alignment:
Q  605 accgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 657  Q
    ||||||| ||||||||||| |||| ||| ||||||||||||| ||||||||||    
T  1547426 accgtcgatgatgatgaatttgaagatagattcccaacactcgtcaggtaaat 1547374  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 53761110 - 53761012
Alignment:
Q  61 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtg 159  Q
    |||| ||||| ||||| ||||| ||  | |||||||||||||||||||| | | | ||||  |||  ||||||||||||||| |||||||||| |||||    
T  53761110 tgacctcttgaagaagattacaattcttcaacaagtggaaaagtgattgttcgattatggttaagccagaaagattaaccttacggagtttgaaaagtg 53761012  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 7225290 - 7225253
Alignment:
Q  252 aggtcgagttcttcgagcaaagggaaacattctgcgat 289  Q
    ||||||||||||||||||||||||||||| || |||||    
T  7225290 aggtcgagttcttcgagcaaagggaaacaatccgcgat 7225253  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 53760947 - 53760907
Alignment:
Q  251 gaggtcgagttcttcgagcaaagggaaacattctgcgataa 291  Q
    |||||||||||||||  |||||||||||||||| |||||||    
T  53760947 gaggtcgagttcttcccgcaaagggaaacattccgcgataa 53760907  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 10615459 - 10615553
Alignment:
Q  72 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtga 166  Q
    |||||||||||||||  || |||||||| ||| ||||| ||||| ||| ||||   |||||||||||||||||||||||| | ||||||||||||    
T  10615459 agaagcttacagttgtcgagcaagtggagaagggattgattgtttatgagaaaactagaaagattaaccttgcggagtttaaaaagtgaaagtga 10615553  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 311 - 370
Target Start/End: Original strand, 10615713 - 10615772
Alignment:
Q  311 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 370  Q
    ||||||||||| |||||||||||||||||| ||||| || |||||||| || ||||||||    
T  10615713 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgc 10615772  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 608 - 657
Target Start/End: Complemental strand, 15091334 - 15091285
Alignment:
Q  608 gtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 657  Q
    ||||||||||||||||||||| |  ||||||||||||||||| |||||||    
T  15091334 gtcgttgatgatgaatctgaagacgcattcccaacactcatcgggtaaat 15091285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 10169107 - 10169047
Alignment:
Q  310 cggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 370  Q
    |||||||||||| ||||||||||||| |||| ||||| || ||| ||||||| ||||||||    
T  10169107 cggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10169047  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 10169181 - 10169137
Alignment:
Q  251 gaggtcgagttcttcgagcaaagggaaacattctgcgataagaaa 295  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||    
T  10169181 gaggttgagttcttcaagcaaaggaaaacattctgcgataagaaa 10169137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 10176632 - 10176572
Alignment:
Q  310 cggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 370  Q
    |||||||||||| ||||||||||||| |||| ||||| || ||| ||||||| ||||||||    
T  10176632 cggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10176572  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 10176706 - 10176662
Alignment:
Q  251 gaggtcgagttcttcgagcaaagggaaacattctgcgataagaaa 295  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||    
T  10176706 gaggttgagttcttcaagcaaaggaaaacattctgcgataagaaa 10176662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 617 - 661
Target Start/End: Complemental strand, 10167277 - 10167233
Alignment:
Q  617 gatgaatctgaatatacattcccaacactcatcaggtaaatctga 661  Q
    |||||||||||||||  |||||||||| || ||||||||||||||    
T  10167277 gatgaatctgaatatcaattcccaacattcgtcaggtaaatctga 10167233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 625 - 657
Target Start/End: Original strand, 10616213 - 10616245
Alignment:
Q  625 tgaatatacattcccaacactcatcaggtaaat 657  Q
    |||| ||||||||||||||||||||||||||||    
T  10616213 tgaagatacattcccaacactcatcaggtaaat 10616245  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 32151969 - 32152013
Alignment:
Q  312 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagct 356  Q
    |||||||||| |||||||||||||||||||||||| || ||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagct 32152013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 18314929 - 18314876
Alignment:
Q  66 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 119  Q
    |||| |||||||||||||||  |||||||||||||||| ||||| | |||||||    
T  18314929 tcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatg 18314876  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 252 - 280
Target Start/End: Complemental strand, 18314768 - 18314740
Alignment:
Q  252 aggtcgagttcttcgagcaaagggaaaca 280  Q
    |||||||||||||||||||||||||||||    
T  18314768 aggtcgagttcttcgagcaaagggaaaca 18314740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 34936034 - 34935986
Alignment:
Q  320 gaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 368  Q
    |||||| |||||||||||||| |||||||| ||| ||||||| ||||||    
T  34936034 gaaagatgtcaaagttgtaatattttgtgagaaaactcgcaaaccattt 34935986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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