View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8351_high_2 (Length: 339)

Name: NF8351_high_2
Description: NF8351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8351_high_2
NF8351_high_2
[»] chr3 (12 HSPs)
chr3 (1-339)||(2838706-2839044)
chr3 (3-339)||(2758908-2759244)
chr3 (3-339)||(2855918-2856254)
chr3 (1-339)||(2768763-2769101)
chr3 (5-336)||(2818254-2818585)
chr3 (3-339)||(2748692-2749025)
chr3 (5-339)||(2797055-2797389)
chr3 (3-339)||(5412601-5412916)
chr3 (5-339)||(2790052-2790395)
chr3 (1-236)||(2807070-2807299)
chr3 (296-339)||(2755738-2755781)
chr3 (285-339)||(2806955-2807009)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-339)||(6258-6596)


Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 2838706 - 2839044
Alignment:
Q  1 tcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2838706 tcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctg 2838805  T
Q  101 ttgctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2838806 ttgctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatct 2838905  T
Q  201 ctgatgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgcataaagatctgcatccaggaggattggccctatgcattagtcgaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2838906 ctgatgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgcataaagatctgcatccaggaggattggccctatgcattagtcgaag 2839005  T
Q  301 gtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2839006 gtattcatcaatgacatcttcaatgcgaaatgatgcttc 2839044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 339
Target Start/End: Complemental strand, 2759244 - 2758908
Alignment:
Q  3 ttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgtt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||  |||| | | | ||   ||    
T  2759244 ttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctcttcggtagtg---tt 2759148  T
Q  103 gctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctct 202  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  2759147 gctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctct 2759048  T
Q  203 gatgcaattttgtgacggggaatcaaagttttgattaaccttggagtc---atgcataaagatctgcatccaggaggattggccctatgcattagtcgaa 299  Q
    ||||||||||||||||||||||||||||||||||||   |||| | ||    || ||| ||||| ||  ||||||||||||||| |||| || || ||||    
T  2759047 gatgcaattttgtgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaa 2758948  T
Q  300 ggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||| ||||| | ||||||||||||||| ||||||||    
T  2758947 ggtattcgtcaattatatcttcaatgcgaaacgatgcttc 2758908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 3 - 339
Target Start/End: Original strand, 2855918 - 2856254
Alignment:
Q  3 ttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgtt 102  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||| |||||||   |||| |||    
T  2855918 ttgggccttcaatgcctacaacttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctcca---ctgcggtt 2856014  T
Q  103 gctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctct 202  Q
     ||   ||||||||||||||| || | ||||||||||||||||||||||| |||||||| |||||||||  || ||| || ||||||||| |||||||||    
T  2856015 tctttggcttgaggatccttgctcgtgtgaaatttgaaagttatacctctggcttctttccttgattccacgaattgacaacttgatgtcctgaatctct 2856114  T
Q  203 gatgcaattttgtgacggggaatcaaagttttgattaaccttgga---gtcatgcataaagatctgcatccaggaggattggccctatgcattagtcgaa 299  Q
    ||||||||||| ||| ||||||||||||||||||||   |||| |    |  ||  ||||||||  | |||| |||||||||||||||| || |  ||||    
T  2856115 gatgcaattttatgatggggaatcaaagttttgattcggcttgtaaccttgttgactaaagatccacgtccatgaggattggccctatgtatcaaccgaa 2856214  T
Q  300 ggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2856215 ggtattcatcaatgacatcttcaatgcgaaatgatgcttc 2856254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 2769101 - 2768763
Alignment:
Q  1 tcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctg 100  Q
    |||||||||||| |||||||||||||||||||||||||| || ||||||||||  ||||| ||  ||||||||||| |||||| |||||||   || |||    
T  2769101 tcttgggccttccaatcctacaatttctgtttcttcaataaagagggaagacatccgaggatcacgccatcttccactttctgactctcca---ctactg 2769005  T
Q  101 ttgctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatct 200  Q
    || |||||| |||||||||||||||||| |||| |||||||| |||||||||||||||||| |||||||||  || ||| || ||| ||||| |||||||    
T  2769004 ttcctgctgtttgaggatccttgttcatgtgaagtttgaaagctatacctctcgcttctttccttgattccacgaattgacaacttaatgtcctgaatct 2768905  T
Q  201 ctgatgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcg 297  Q
    || |||||||||| ||||||||| |||||||||||||||  |||| | || || |   |||||||| || ||  ||| |||||||||||||  | |  ||    
T  2768904 ctaatgcaattttatgacggggagtcaaagttttgattaggcttgcaatcttgaagattaaagatccgcgtctgggacgattggccctatgggtcaaccg 2768805  T
Q  298 aaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2768804 aaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 2768763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 5 - 336
Target Start/End: Complemental strand, 2818585 - 2818254
Alignment:
Q  5 gggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgttgc 104  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||  |||||| |||  | |||| |||||||   |  | |||||    
T  2818585 gggccttcaaatcctacgatttctgtttcttcaatgaaaagagaagacagtcgaggatcacgccatcctcctgtgtctgactctcca---catccgttgc 2818489  T
Q  105 tgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctctga 204  Q
    |   ||  ||||||||||||||||  |||||||| |||||||||||||||||||||| |||||||||  || ||| || ||||||||| |||||||||||    
T  2818488 tttggcacgaggatccttgttcatgcgaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatctctga 2818389  T
Q  205 tgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgcat---aaagatctgcatccaggaggattggccctatgcattagtcgaagg 301  Q
    ||||||||  | ||||||| ||||||| || ||||| |||||| || |||||   |||||||||||||| |||| ||||| |||||| || |   |||||    
T  2818388 tgcaatttcataacggggagtcaaagtcttcattaatcttggaatcttgcataccaaagatctgcatcctggagaattggtcctatggatcaaaagaagg 2818289  T
Q  302 tattcatcaatgacatcttcaatgcgaaatgatgc 336  Q
    |||||||||||||||||||||||||||||||||||    
T  2818288 tattcatcaatgacatcttcaatgcgaaatgatgc 2818254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 339
Target Start/End: Complemental strand, 2749025 - 2748692
Alignment:
Q  3 ttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgtt 102  Q
    ||||| ||||||  || |||| ||||||||||||||| ||||| |||||||||||||| || |||||| |||||||||||  ||||||        || |    
T  2749025 ttgggacttcaataccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcatgccattttccattttctctctctccta------tgct 2748932  T
Q  103 gctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctct 202  Q
      |||||||||| | ||||||||| | |||||||||||||||||||||||| ||||||| |||||||||  || |||  |  || ||||| ||||| ||     
T  2748931 aatgctgcttgaagttccttgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttca 2748832  T
Q  203 gatgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcgaa 299  Q
    ||||| || |  ||||||||||||||||||||||||  ||||| | || |||    |||||||| ||||| |||||||||||||||||||||||| ||||    
T  2748831 gatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccgcatctaggaggattggccctatgcattagccgaa 2748732  T
Q  300 ggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2748731 ggtattcatcaatgacatcttcaatgcgaaatgatgcttc 2748692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 2797389 - 2797055
Alignment:
Q  5 gggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgttgc 104  Q
    |||||||||||||| |||||| | ||||||||||| |||||||||||||||||||| ||   |||||||| ||| || | ||||| |   |||||||||     
T  2797389 gggccttcaaatccgacaattgcagtttcttcaataaaaagggaagacagtcgaggatcacaccatcttctattatccgtctctcta---ctgctgttgt 2797293  T
Q  105 tgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctctga 204  Q
    |||||||||| |||||| ||   | |||||||||||||||||||||||| ||||||| |||||||||  || |||  | ||| ||||  | |||||| ||    
T  2797292 tgctgcttgatgatcctggtgtctgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgttcttaatctcaga 2797193  T
Q  205 tgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcgaagg 301  Q
    ||| || | |||| ||| |||||| ||||||||||  |||| | || ||||   |||||||| |||||| ||||||| |||||||||||| ||  |||||    
T  2797192 tgctatctggtgaagggaaatcaatgttttgattagacttgcaatcttgcagactaaagatccgcatcccggaggataggccctatgcatcagctgaagg 2797093  T
Q  302 tattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2797092 tattcatcaatgacatcttcaatgcgaaatgatgcttc 2797055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 339
Target Start/End: Complemental strand, 5412916 - 5412601
Alignment:
Q  3 ttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgtt 102  Q
    |||| ||||||| |||||||| ||||||||||  |||||| ||||||||||||||||| ||  |||||||||||||||||| |||||    |||||||||    
T  5412916 ttggaccttcaattcctacaacttctgtttctgtaatgaatagggaagacagtcgaggatctcgccatcttccattttctgtctctc---tactgctgtt 5412820  T
Q  103 gctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctct 202  Q
    |||||                     ||||||||||||||||||||||||| ||||||| |||||||||  || ||| || ||| ||||| ||||||||     
T  5412819 gctgc---------------------ttgaaatttgaaagttatacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatctca 5412741  T
Q  203 gatgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcgaa 299  Q
    ||||| || |  ||| ||||||||||||||||||| || |||| | || ||||   |||||||||||||||| |||||||| ||||||||||||| |||     
T  5412740 gatgctatctgatgatggggaatcaaagttttgatcaagcttgcaatcttgcagactaaagatctgcatccaagaggattgaccctatgcattagccgat 5412641  T
Q  300 ggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  5412640 ggtattcgtcaatgacatcttcaatgcgaaatgatgcttc 5412601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 2790395 - 2790052
Alignment:
Q  5 gggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgttgc 104  Q
    |||||||||||||| |||||| | |||||||||||||||||||||||||  ||||| || |||||||||| ||| || | |||||    |||||||||||    
T  2790395 gggccttcaaatccgacaattgcagtttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctc---tactgctgttgc 2790299  T
Q  105 tgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctctga 204  Q
    |||||||||| |||||| ||   | |||||||||||||||||||||||| ||||||| |||||||||  || |||  | ||| |||| || |||||| ||    
T  2790298 tgctgcttgatgatcctggtgtctgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgtttttaatctcaga 2790199  T
Q  205 tgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgc---ataaagat---ctgcatccaggaggattg------gccctatgcatt 292  Q
    ||| || |  ||| |||||||||||||||||||||  |||| | || |||   ||||||||   | |||||||| |||||||      |||||||||||     
T  2790198 tgctatctgatgatggggaatcaaagttttgattaggcttgcaatcttgcagaataaagattgacggcatccagaaggattggattttgccctatgcatg 2790099  T
Q  293 agtcgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    || |||||||||||||| |||| ||||||||||||||||||||||||    
T  2790098 agccgaaggtattcatcgatgatatcttcaatgcgaaatgatgcttc 2790052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 2807299 - 2807070
Alignment:
Q  1 tcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctg 100  Q
    |||||||  ||||||||||||||||||| |||||||||| |||||||||||||||||||| ||  |||||||||||||||||| ||||| ||   |||||    
T  2807299 tcttgggaattcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctctag---tgctg 2807203  T
Q  101 ttgctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatct 200  Q
    |   ||| |||||| ||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||| ||   | || ||| |||||| | ||||    
T  2807202 t---tgcggcttgatgatccttgttcatgtgaaatttgtaagttatacctctcacttctttccttgattccgcgaaccgacaccttaatgtctcggatct 2807106  T
Q  201 ctgatgcaattttgtgacggggaatcaaagttttga 236  Q
      ||||| || |  ||||||||||||||||||||||    
T  2807105 tagatgctatatgatgacggggaatcaaagttttga 2807070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 2755781 - 2755738
Alignment:
Q  296 cgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2755781 cgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 2755738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 2807009 - 2806955
Alignment:
Q  285 tatgcattagtcgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||| || ||| |||||||||| |||| ||||||||||||||||||||||||    
T  2807009 tatgcatcagccgatggtattcatcgatgatatcttcaatgcgaaatgatgcttc 2806955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 6258 - 6596
Alignment:
Q  1 tcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctg 100  Q
    |||||||||||| |||||||||| ||| ||||||||||| ||||||| ||| | |||||| ||  ||||||||||||||||||||||||| |   |||||    
T  6258 tcttgggccttcgaatcctacaacttcagtttcttcaataaaaagggcagataatcgaggatcacgccatcttccattttctgcctctcctg---tgctg 6354  T
Q  101 ttgctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatct 200  Q
     |||||   ||||| |||||  |||||| | ||||||||||||||||||| || ||||| | |||||||||  || ||| |||||| ||||| |||||||    
T  6355 ctgctgacacttgatgatccaggttcatgtaaaatttgaaagttatacctttcacttctgtccttgattccacgaattgacagctttatgtcctgaatct 6454  T
Q  201 ctgatgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcg 297  Q
    | ||||| || |  ||  | | |||||||||||||||||  |||  | || ||||   ||| |||| |||||||||||| ||||||||||| || || ||    
T  6455 cagatgctatctgatgctgagaaatcaaagttttgattaggcttacaatcttgcagactaatgatccgcatccaggagggttggccctatggatcagccg 6554  T
Q  298 aaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  6555 aaggtattcatcaataacatcttcaatgcgaaatgatgcttc 6596  T

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