View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8351_high_3 (Length: 303)
Name: NF8351_high_3
Description: NF8351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8351_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 36100402 - 36100681
Alignment:
| Q |
14 |
caaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgtctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36100402 |
caaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgcctt |
36100501 |
T |
|
| Q |
114 |
atgttataattgacttgcttcacctcaattcagttgaagtcaatttacaagatgaaacaacatgggttgaagctggtgcaacacttggtaagatttatta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36100502 |
atgttataattgacttgcttcacctcaattcagttgaagtcaatttacaagatgaaacaacatgggttgaagctggtgcaacacttggtaagatttatta |
36100601 |
T |
|
| Q |
214 |
taccatttcaaagaaaaataattctcttgctttcccatctggggtctgtttttctctaggtgctggtggtcatttctctg |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36100602 |
taccatttcaaagaaaaataattctcttgctttcccatctggggtctgtttttctctaggtgctggtggtcatttctctg |
36100681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 56 - 293
Target Start/End: Original strand, 21482435 - 21482672
Alignment:
| Q |
56 |
agaatccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtca |
155 |
Q |
| |
|
||||||||||||||||||||||| | |||||| |||||||| ||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
21482435 |
agaatccgaagtggcggccacgactttgaaggtttctcatatgtatcagacgtgccttttgttataattgacttgcttcatctcaattcagttgatgtca |
21482534 |
T |
|
| Q |
156 |
atttacaagatgaaacaacatgggttgaagctggtgcaacacttggtaagatttattataccatttcaaagaaaaataattctcttgctttcccatctgg |
255 |
Q |
| |
|
|||||||||| |||||| ||||||||||| | |||||||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||||| || |
|
|
| T |
21482535 |
atttacaagaagaaacagcatgggttgaatcaggtgcaacacttggaaagctttattataccattggaaagaaaaataactctcttgctttcccatccgg |
21482634 |
T |
|
| Q |
256 |
ggtctgtttttctctaggtgctggtggtcatttctctg |
293 |
Q |
| |
|
|| ||||||||| | || |||||||||||||| |||| |
|
|
| T |
21482635 |
cgtttgtttttctgtcggagctggtggtcatttttctg |
21482672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 34971980 - 34971705
Alignment:
| Q |
18 |
caacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgt |
117 |
Q |
| |
|
||||||||||||||||||||| |||||| | || ||||||| |||||||| || || || |||||||| || ||||| |||||||| ||| ||| | | |
|
|
| T |
34971980 |
caacaattaaatgtgccaaaagtaacaacattcagataagaattcgaagtggagggcatgactatgaaggtttatcatatttatcagatgtgccttttat |
34971881 |
T |
|
| Q |
118 |
tataattgacttgcttcacctcaattcagttgaagtcaatttacaagatgaaacaacatgggttgaagctggtgcaacacttggtaagatttattatacc |
217 |
Q |
| |
|
| || ||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
34971880 |
tgtacttgacatgtttcacctcaattcagttgatgtcaatttacaagaatcaacaacatgggttgaatcaggtgcaacacttggtaagatttattataca |
34971781 |
T |
|
| Q |
218 |
atttcaaagaaaaataattctcttgctttcccatctggggtctgtttttctctaggtgctggtggtcatttctctg |
293 |
Q |
| |
|
||| ||| ||||| |||||| ||||||| ||||| |||||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
34971780 |
attggaaataaaaacaattcttttgcttttccatccggggtctgttttactgtaggtgctggtggtcatttttctg |
34971705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 36107666 - 36107940
Alignment:
| Q |
19 |
aacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgtt |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||| | || | ||||| ||||||||||| ||||| |||||||| || ||||| ||||||| ||| ||| | || |
|
|
| T |
36107666 |
aacaattaaatgtgccaaaagcaacaacattcagattagaattcgaagtggcggtcacgactatgaaggtttttcatatgtatcagatgtgccttttatt |
36107765 |
T |
|
| Q |
119 |
ataattgacttgcttcacctcaattcagttgaagtcaatttacaagatgaaacaacatgggttgaagctggtgcaacacttggtaagatttattatacca |
218 |
Q |
| |
|
||| ||||| || |||| |||||||||||||| ||||||||||||| |||| ||||||||||| | |||||||||||||||||||||||||||| || |
|
|
| T |
36107766 |
atacttgacatgtttcatctcaattcagttgatatcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataaca |
36107865 |
T |
|
| Q |
219 |
tttcaaagaaaaataattctcttgctttcccatctggggtctgtttttctctaggtgctggtggtcatttctctg |
293 |
Q |
| |
|
|| |||| |||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36107866 |
ttgcaaataaaagcaacaagcttgctttcccatctggggtctgttttactctaggtgctggtggtcatttctctg |
36107940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 36090669 - 36090406
Alignment:
| Q |
19 |
aacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgtt |
118 |
Q |
| |
|
|||| |||||||||| |||| |||||| | || | ||||| ||||||||||| || ||||| ||||| || ||| | |||||||| || |||||||| |
|
|
| T |
36090669 |
aacagttaaatgtgctaaaagtaacaacattcagatcagaattcgaagtggcggacatgattacgaaggtttatcaaatgtatcagacatgccttatgtt |
36090570 |
T |
|
| Q |
119 |
ataattgacttgcttcacctcaattcagttgaagtcaatttacaagatgaaacaacatgggttgaagctggtgcaacacttggtaagatttattatacca |
218 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| ||||||||| |||| ||||| ||||||||||| | ||||||| ||||||||||||||||||||| | |
|
|
| T |
36090569 |
ataattgacttgcttcatctcaattcaattgatgtcaatttagaagaagaaactgcatgggttgaatcaggtgcaatacttggtaagatttattatacga |
36090470 |
T |
|
| Q |
219 |
tttcaaagaaaaataattctcttgctttcccatctggggtctgtttttctctaggtgctggtgg |
282 |
Q |
| |
|
|| ||| ||||||||| || |||||||||||||||||||| |||||||| |||| |||||||| |
|
|
| T |
36090469 |
ttgcaatgaaaaataactcccttgctttcccatctggggtatgtttttcggtaggggctggtgg |
36090406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 36079952 - 36080011
Alignment:
| Q |
169 |
aacaacatgggttgaagctggtgcaacacttggtaagatttattataccatttcaaagaa |
228 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
36079952 |
aacagcatgggttgaagcaggtgcaacacttggtaaggtttattattacattgcaaagaa |
36080011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 8338290 - 8338560
Alignment:
| Q |
18 |
caacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgt |
117 |
Q |
| |
|
||||||||||||||||||||| |||||| | || ||||||| ||||||||||||||||| || ||||||||||| ||| |||||||| | |||| ||| |
|
|
| T |
8338290 |
caacaattaaatgtgccaaaagcaacaatattcagataagaattcgaagtggcggccacgactacgaaggcttctcttacgtatcagacatatcttttgt |
8338389 |
T |
|
| Q |
118 |
tataattgacttgcttcacctcaattcagttgaagtcaatttacaagatgaaacaacatgggttgaagctggtgcaacacttggtaagatttattatacc |
217 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
8338390 |
tataattgacctgcttcacctcaattcagttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattatacc |
8338489 |
T |
|
| Q |
218 |
atttcaaagaaaaataattctcttgctttcccatctggggtctgtttttctctaggtgctggtggtcattt |
288 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| ||||||||||||| | | |||||||||||||||||||| |
|
|
| T |
8338490 |
attgcaaagaaaaacaattctcttgctttcccgtctggggtctgttctacactaggtgctggtggtcattt |
8338560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 6838427 - 6838701
Alignment:
| Q |
19 |
aacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgtt |
118 |
Q |
| |
|
|||| ||||||||||||||| ||||||| | || | ||||| |||||||| || ||||| |||||||| | ||||| ||||||| ||| ||| |||| |
|
|
| T |
6838427 |
aacagttaaatgtgccaaaagcaacaacattcagattagaattcgaagtggtggtcacgactatgaaggttgttcatatgtatcagatgtgccttttgtt |
6838526 |
T |
|
| Q |
119 |
ataattgacttgcttcacctcaattcagttgaagtcaatttacaagatgaaacaacatgggttgaagctggtgcaacacttggtaagatttattatacca |
218 |
Q |
| |
|
||| ||||| || |||| |||||||| ||||| |||||||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
6838527 |
atacttgacatgtttcatctcaattctgttgatgtcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattatacca |
6838626 |
T |
|
| Q |
219 |
tttcaaagaaaaataattctcttgctttcccatctggggtctgtttttctctaggtgctggtggtcatttctctg |
293 |
Q |
| |
|
|| ||||||||| || |||||||||||||||||||| || ||| || |||||||||||||||||||||||| |
|
|
| T |
6838627 |
ttgcaaagaaaagcaacaagcttgctttcccatctggggtgtgctttactgtaggtgctggtggtcatttctctg |
6838701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University