View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8351_low_2 (Length: 339)

Name: NF8351_low_2
Description: NF8351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8351_low_2
NF8351_low_2
[»] chr3 (12 HSPs)
chr3 (1-339)||(2838706-2839044)
chr3 (3-339)||(2758908-2759244)
chr3 (3-339)||(2855918-2856254)
chr3 (1-339)||(2768763-2769101)
chr3 (5-336)||(2818254-2818585)
chr3 (3-339)||(2748692-2749025)
chr3 (5-339)||(2797055-2797389)
chr3 (3-339)||(5412601-5412916)
chr3 (5-339)||(2790052-2790395)
chr3 (1-236)||(2807070-2807299)
chr3 (296-339)||(2755738-2755781)
chr3 (285-339)||(2806955-2807009)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-339)||(6258-6596)


Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 2838706 - 2839044
Alignment:
1 tcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2838706 tcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctg 2838805  T
101 ttgctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2838806 ttgctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatct 2838905  T
201 ctgatgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgcataaagatctgcatccaggaggattggccctatgcattagtcgaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2838906 ctgatgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgcataaagatctgcatccaggaggattggccctatgcattagtcgaag 2839005  T
301 gtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    |||||||||||||||||||||||||||||||||||||||    
2839006 gtattcatcaatgacatcttcaatgcgaaatgatgcttc 2839044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 339
Target Start/End: Complemental strand, 2759244 - 2758908
Alignment:
3 ttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgtt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||  |||| | | | ||   ||    
2759244 ttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctcttcggtagtg---tt 2759148  T
103 gctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctct 202  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||    
2759147 gctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctct 2759048  T
203 gatgcaattttgtgacggggaatcaaagttttgattaaccttggagtc---atgcataaagatctgcatccaggaggattggccctatgcattagtcgaa 299  Q
    ||||||||||||||||||||||||||||||||||||   |||| | ||    || ||| ||||| ||  ||||||||||||||| |||| || || ||||    
2759047 gatgcaattttgtgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaa 2758948  T
300 ggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||| ||||| | ||||||||||||||| ||||||||    
2758947 ggtattcgtcaattatatcttcaatgcgaaacgatgcttc 2758908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 3 - 339
Target Start/End: Original strand, 2855918 - 2856254
Alignment:
3 ttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgtt 102  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||| |||||||   |||| |||    
2855918 ttgggccttcaatgcctacaacttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctcca---ctgcggtt 2856014  T
103 gctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctct 202  Q
     ||   ||||||||||||||| || | ||||||||||||||||||||||| |||||||| |||||||||  || ||| || ||||||||| |||||||||    
2856015 tctttggcttgaggatccttgctcgtgtgaaatttgaaagttatacctctggcttctttccttgattccacgaattgacaacttgatgtcctgaatctct 2856114  T
203 gatgcaattttgtgacggggaatcaaagttttgattaaccttgga---gtcatgcataaagatctgcatccaggaggattggccctatgcattagtcgaa 299  Q
    ||||||||||| ||| ||||||||||||||||||||   |||| |    |  ||  ||||||||  | |||| |||||||||||||||| || |  ||||    
2856115 gatgcaattttatgatggggaatcaaagttttgattcggcttgtaaccttgttgactaaagatccacgtccatgaggattggccctatgtatcaaccgaa 2856214  T
300 ggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||||||||||||||||||||||||||||||||||||    
2856215 ggtattcatcaatgacatcttcaatgcgaaatgatgcttc 2856254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 2769101 - 2768763
Alignment:
1 tcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctg 100  Q
    |||||||||||| |||||||||||||||||||||||||| || ||||||||||  ||||| ||  ||||||||||| |||||| |||||||   || |||    
2769101 tcttgggccttccaatcctacaatttctgtttcttcaataaagagggaagacatccgaggatcacgccatcttccactttctgactctcca---ctactg 2769005  T
101 ttgctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatct 200  Q
    || |||||| |||||||||||||||||| |||| |||||||| |||||||||||||||||| |||||||||  || ||| || ||| ||||| |||||||    
2769004 ttcctgctgtttgaggatccttgttcatgtgaagtttgaaagctatacctctcgcttctttccttgattccacgaattgacaacttaatgtcctgaatct 2768905  T
201 ctgatgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcg 297  Q
    || |||||||||| ||||||||| |||||||||||||||  |||| | || || |   |||||||| || ||  ||| |||||||||||||  | |  ||    
2768904 ctaatgcaattttatgacggggagtcaaagttttgattaggcttgcaatcttgaagattaaagatccgcgtctgggacgattggccctatgggtcaaccg 2768805  T
298 aaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||||||||||||||||||||||||||||||||||||||    
2768804 aaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 2768763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 5 - 336
Target Start/End: Complemental strand, 2818585 - 2818254
Alignment:
5 gggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgttgc 104  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||  |||||| |||  | |||| |||||||   |  | |||||    
2818585 gggccttcaaatcctacgatttctgtttcttcaatgaaaagagaagacagtcgaggatcacgccatcctcctgtgtctgactctcca---catccgttgc 2818489  T
105 tgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctctga 204  Q
    |   ||  ||||||||||||||||  |||||||| |||||||||||||||||||||| |||||||||  || ||| || ||||||||| |||||||||||    
2818488 tttggcacgaggatccttgttcatgcgaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatctctga 2818389  T
205 tgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgcat---aaagatctgcatccaggaggattggccctatgcattagtcgaagg 301  Q
    ||||||||  | ||||||| ||||||| || ||||| |||||| || |||||   |||||||||||||| |||| ||||| |||||| || |   |||||    
2818388 tgcaatttcataacggggagtcaaagtcttcattaatcttggaatcttgcataccaaagatctgcatcctggagaattggtcctatggatcaaaagaagg 2818289  T
302 tattcatcaatgacatcttcaatgcgaaatgatgc 336  Q
    |||||||||||||||||||||||||||||||||||    
2818288 tattcatcaatgacatcttcaatgcgaaatgatgc 2818254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 339
Target Start/End: Complemental strand, 2749025 - 2748692
Alignment:
3 ttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgtt 102  Q
    ||||| ||||||  || |||| ||||||||||||||| ||||| |||||||||||||| || |||||| |||||||||||  ||||||        || |    
2749025 ttgggacttcaataccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcatgccattttccattttctctctctccta------tgct 2748932  T
103 gctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctct 202  Q
      |||||||||| | ||||||||| | |||||||||||||||||||||||| ||||||| |||||||||  || |||  |  || ||||| ||||| ||     
2748931 aatgctgcttgaagttccttgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttca 2748832  T
203 gatgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcgaa 299  Q
    ||||| || |  ||||||||||||||||||||||||  ||||| | || |||    |||||||| ||||| |||||||||||||||||||||||| ||||    
2748831 gatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccgcatctaggaggattggccctatgcattagccgaa 2748732  T
300 ggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||||||||||||||||||||||||||||||||||||    
2748731 ggtattcatcaatgacatcttcaatgcgaaatgatgcttc 2748692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 2797389 - 2797055
Alignment:
5 gggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgttgc 104  Q
    |||||||||||||| |||||| | ||||||||||| |||||||||||||||||||| ||   |||||||| ||| || | ||||| |   |||||||||     
2797389 gggccttcaaatccgacaattgcagtttcttcaataaaaagggaagacagtcgaggatcacaccatcttctattatccgtctctcta---ctgctgttgt 2797293  T
105 tgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctctga 204  Q
    |||||||||| |||||| ||   | |||||||||||||||||||||||| ||||||| |||||||||  || |||  | ||| ||||  | |||||| ||    
2797292 tgctgcttgatgatcctggtgtctgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgttcttaatctcaga 2797193  T
205 tgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcgaagg 301  Q
    ||| || | |||| ||| |||||| ||||||||||  |||| | || ||||   |||||||| |||||| ||||||| |||||||||||| ||  |||||    
2797192 tgctatctggtgaagggaaatcaatgttttgattagacttgcaatcttgcagactaaagatccgcatcccggaggataggccctatgcatcagctgaagg 2797093  T
302 tattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||||||||||||||||||||||||||||||||||    
2797092 tattcatcaatgacatcttcaatgcgaaatgatgcttc 2797055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 339
Target Start/End: Complemental strand, 5412916 - 5412601
Alignment:
3 ttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgtt 102  Q
    |||| ||||||| |||||||| ||||||||||  |||||| ||||||||||||||||| ||  |||||||||||||||||| |||||    |||||||||    
5412916 ttggaccttcaattcctacaacttctgtttctgtaatgaatagggaagacagtcgaggatctcgccatcttccattttctgtctctc---tactgctgtt 5412820  T
103 gctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctct 202  Q
    |||||                     ||||||||||||||||||||||||| ||||||| |||||||||  || ||| || ||| ||||| ||||||||     
5412819 gctgc---------------------ttgaaatttgaaagttatacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatctca 5412741  T
203 gatgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcgaa 299  Q
    ||||| || |  ||| ||||||||||||||||||| || |||| | || ||||   |||||||||||||||| |||||||| ||||||||||||| |||     
5412740 gatgctatctgatgatggggaatcaaagttttgatcaagcttgcaatcttgcagactaaagatctgcatccaagaggattgaccctatgcattagccgat 5412641  T
300 ggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||| ||||||||||||||||||||||||||||||||    
5412640 ggtattcgtcaatgacatcttcaatgcgaaatgatgcttc 5412601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 2790395 - 2790052
Alignment:
5 gggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgttgc 104  Q
    |||||||||||||| |||||| | |||||||||||||||||||||||||  ||||| || |||||||||| ||| || | |||||    |||||||||||    
2790395 gggccttcaaatccgacaattgcagtttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctc---tactgctgttgc 2790299  T
105 tgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctctga 204  Q
    |||||||||| |||||| ||   | |||||||||||||||||||||||| ||||||| |||||||||  || |||  | ||| |||| || |||||| ||    
2790298 tgctgcttgatgatcctggtgtctgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgtttttaatctcaga 2790199  T
205 tgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgc---ataaagat---ctgcatccaggaggattg------gccctatgcatt 292  Q
    ||| || |  ||| |||||||||||||||||||||  |||| | || |||   ||||||||   | |||||||| |||||||      |||||||||||     
2790198 tgctatctgatgatggggaatcaaagttttgattaggcttgcaatcttgcagaataaagattgacggcatccagaaggattggattttgccctatgcatg 2790099  T
293 agtcgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    || |||||||||||||| |||| ||||||||||||||||||||||||    
2790098 agccgaaggtattcatcgatgatatcttcaatgcgaaatgatgcttc 2790052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 2807299 - 2807070
Alignment:
1 tcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctg 100  Q
    |||||||  ||||||||||||||||||| |||||||||| |||||||||||||||||||| ||  |||||||||||||||||| ||||| ||   |||||    
2807299 tcttgggaattcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctctag---tgctg 2807203  T
101 ttgctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatct 200  Q
    |   ||| |||||| ||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||| ||   | || ||| |||||| | ||||    
2807202 t---tgcggcttgatgatccttgttcatgtgaaatttgtaagttatacctctcacttctttccttgattccgcgaaccgacaccttaatgtctcggatct 2807106  T
201 ctgatgcaattttgtgacggggaatcaaagttttga 236  Q
      ||||| || |  ||||||||||||||||||||||    
2807105 tagatgctatatgatgacggggaatcaaagttttga 2807070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 2755781 - 2755738
Alignment:
296 cgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
2755781 cgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 2755738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 2807009 - 2806955
Alignment:
285 tatgcattagtcgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||| || ||| |||||||||| |||| ||||||||||||||||||||||||    
2807009 tatgcatcagccgatggtattcatcgatgatatcttcaatgcgaaatgatgcttc 2806955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 6258 - 6596
Alignment:
1 tcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctg 100  Q
    |||||||||||| |||||||||| ||| ||||||||||| ||||||| ||| | |||||| ||  ||||||||||||||||||||||||| |   |||||    
6258 tcttgggccttcgaatcctacaacttcagtttcttcaataaaaagggcagataatcgaggatcacgccatcttccattttctgcctctcctg---tgctg 6354  T
101 ttgctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatct 200  Q
     |||||   ||||| |||||  |||||| | ||||||||||||||||||| || ||||| | |||||||||  || ||| |||||| ||||| |||||||    
6355 ctgctgacacttgatgatccaggttcatgtaaaatttgaaagttatacctttcacttctgtccttgattccacgaattgacagctttatgtcctgaatct 6454  T
201 ctgatgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcg 297  Q
    | ||||| || |  ||  | | |||||||||||||||||  |||  | || ||||   ||| |||| |||||||||||| ||||||||||| || || ||    
6455 cagatgctatctgatgctgagaaatcaaagttttgattaggcttacaatcttgcagactaatgatccgcatccaggagggttggccctatggatcagccg 6554  T
298 aaggtattcatcaatgacatcttcaatgcgaaatgatgcttc 339  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
6555 aaggtattcatcaataacatcttcaatgcgaaatgatgcttc 6596  T

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