View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8352_high_1 (Length: 402)
Name: NF8352_high_1
Description: NF8352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8352_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 5053055 - 5052672
Alignment:
| Q |
1 |
ttactttaaacgcatgattattacacacacgatgctccacttcttgagtaaggcgggaaatgaaacagttctgctatgcaaaggatgttccagaaaaaca |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5053055 |
ttactttaaacgaatgattattacacacacgatgctccacttcttgagtaaggtgggaaatgaaacagttctgctatgcaaaggatgttccagaaaaaca |
5052956 |
T |
|
| Q |
101 |
ttaatatacaaagagtattttagaaaggtcttcacacaaattagacgcattaagttcactacaaaattttcttaatatatagggagaaaaaatagatact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5052955 |
ttaatatacaaagagtattttagaaaggtcttcacacaaattagacgcatcaagttcactacaaaattttcttaatatatagggagaaaaaatagatact |
5052856 |
T |
|
| Q |
201 |
tatacaatttgaaacagatggtaacatannnnnnnnctcgaacaaggcaaactaacgaaccgaagttggatggtagcataaattaatatgaatttaccat |
300 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5052855 |
tatacaatttgaaacagatggtagcatattttttttctcgaacaaggcaaactaatgaaccgaaattggatggtagcataaattaatatgaatttaccat |
5052756 |
T |
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| Q |
301 |
agtaaaatatcaattcctataatttcagcactcagcatctttgaagtgagggtacttgtaaaacagtgaagtactagtacttgt |
384 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5052755 |
agtaaaatatcaattcctataatttcaacactcagcatctttgaagtgagggtacttgtaaaacagtgaagtactagtacttgt |
5052672 |
T |
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