View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8352_low_3 (Length: 253)
Name: NF8352_low_3
Description: NF8352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8352_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 21313533 - 21313766
Alignment:
| Q |
1 |
tgattgtacaaatatcatttctcaatataaaaagctataagttagcttacagtacttgaattaacatctaaatattttatcagtcaatcaaaaaagttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
21313533 |
tgattgtacaaatatcatttctcaatataaaaagctataaattagcttacagtacttgaattaacatctaaaaaatttatcagtcaatcaaaaaagttgg |
21313632 |
T |
|
| Q |
101 |
ttgccaaacgtgtcattttaccaaaactagagcttataagttagtccaataaactacaagttgtctaatctatgttacctaacatagcctaaagctgcac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21313633 |
ttgccaaacgtgtcattttaccaaaactagagcttataagttagtccaataaactaccagttgtctaatctatgttacctaacatagcctaaagctgcac |
21313732 |
T |
|
| Q |
201 |
taaaagaaatatgtaagttaatgttactcggaat |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
21313733 |
taaaagaaatatgtaagttaatgttactcggaat |
21313766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5393883 - 5393915
Alignment:
| Q |
1 |
tgattgtacaaatatcatttctcaatataaaaa |
33 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
5393883 |
tgattgtacaaatatcatttctcaataaaaaaa |
5393915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37690451 - 37690419
Alignment:
| Q |
1 |
tgattgtacaaatatcatttctcaatataaaaa |
33 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
37690451 |
tgattgtacaaatatcatttctcaatagaaaaa |
37690419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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