View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8352_low_4 (Length: 211)
Name: NF8352_low_4
Description: NF8352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8352_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 21193453 - 21193630
Alignment:
| Q |
20 |
gaagggacaaacactcctacgtcaaccttcttctatgtctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgcc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21193453 |
gaagggacaaacactcctacgtcaaccttcttctatgtctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgcc |
21193552 |
T |
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| Q |
120 |
gacgagctcgtcaagaccgcggtacnnnnnnnncttctcttttgaaactgtccatgttagtattgttagtagtattat |
197 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21193553 |
gacgagctcgtcaagaccgcggtacttttttttcttctcttttgaaactgtccatgttagtattgttagtagtattat |
21193630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 27249226 - 27249403
Alignment:
| Q |
20 |
gaagggacaaacactcctacgtcaaccttcttctatgtctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgcc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27249226 |
gaagggacaaacactcctacgtcaaccttcttctatgtctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgcc |
27249325 |
T |
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| Q |
120 |
gacgagctcgtcaagaccgcggtacnnnnnnnncttctcttttgaaactgtccatgttagtattgttagtagtattat |
197 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27249326 |
gacgagctcgtcaagaccgcggtacttttttttcttctcttttgaaactgtccatgttagtattgttagtagtattat |
27249403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 27261155 - 27261231
Alignment:
| Q |
67 |
gatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgccgacgagctcgtcaagaccgcggta |
143 |
Q |
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|||||||||| | ||||||||| |||| || || |||||||||||||||||| | |||||||| |||||||||||| |
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| T |
27261155 |
gatgcaaccccgccgctccatcaagtctcactatcagagctggttcctatgccaatgagctcgttaagaccgcggta |
27261231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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