View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8353_high_2 (Length: 489)
Name: NF8353_high_2
Description: NF8353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8353_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 5 - 473
Target Start/End: Complemental strand, 37903011 - 37902543
Alignment:
| Q |
5 |
ttttcttgtccccctctctggcagtgcatagaaagtatttttaatcactatgctgctaaatcttcaggattagaactgctgttgaatcttctccaatcta |
104 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37903011 |
tttttttgtccccctctctggcagtgcatagaaagtatttttaatcactatgctgctaaattttcaggattagaactgctgttgaatcttctccaatcta |
37902912 |
T |
|
| Q |
105 |
caaacccaaagcagaaaggtgatgcttcagcagcgcttcacacaatggctatgaaagacatgtgttcctctattgttgatcctgcacctacatcaccaac |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37902911 |
caaacccaaagcagaaaggtgatgcttcagcagcgcttcacacaatggctatgaaagacatgtgttcctctattgttgatcctgctcctacatcaccaac |
37902812 |
T |
|
| Q |
205 |
tccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttccaagttatcataa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37902811 |
tccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttccaagttatcataa |
37902712 |
T |
|
| Q |
305 |
ttgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatggaaaatgagatc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37902711 |
ttgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatggaaaatgagatc |
37902612 |
T |
|
| Q |
405 |
tttgttttgtgttgtatgcaggtttacttgggtgagcaatatgtaaacaatcctaaactttctgatgtc |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37902611 |
tttgttttgtgttgtatgcaggtttacttgggtgagcaatacgtaaacaatcctaaactttctgatgtc |
37902543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 5 - 473
Target Start/End: Complemental strand, 37909522 - 37909054
Alignment:
| Q |
5 |
ttttcttgtccccctctctggcagtgcatagaaagtatttttaatcactatgctgctaaatcttcaggattagaactgctgttgaatcttctccaatcta |
104 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37909522 |
tttttttgtccccctctctggcagtgcatagaaagtatttttaatcactatgctgctaaattttcaggattagaactgctgttgaatcttctccaatcta |
37909423 |
T |
|
| Q |
105 |
caaacccaaagcagaaaggtgatgcttcagcagcgcttcacacaatggctatgaaagacatgtgttcctctattgttgatcctgcacctacatcaccaac |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37909422 |
caaacccaaagcagaaaggtgatgcttcagcagcgcttcacacaatggctatgaaagacatgtgttcctctattgttgatcctgctcctacatcaccaac |
37909323 |
T |
|
| Q |
205 |
tccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttccaagttatcataa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37909322 |
tccccaggtattttgcattttatttatcaaatgggctcatcatatctagtttggttttttgttcttcacttgttgaagcatttgttccaagttatcataa |
37909223 |
T |
|
| Q |
305 |
ttgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatggaaaatgagatc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37909222 |
ttgcacaattcaattgaagtttgaacttcttgtctttgaaactgagttgttcatattctattttctatatattacggggatgaaaatggaaaatgagatc |
37909123 |
T |
|
| Q |
405 |
tttgttttgtgttgtatgcaggtttacttgggtgagcaatatgtaaacaatcctaaactttctgatgtc |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37909122 |
tttgttttgtgttgtatgcaggtttacttgggtgagcaatacgtaaacaatcctaaactttctgatgtc |
37909054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University