View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8353_high_6 (Length: 326)
Name: NF8353_high_6
Description: NF8353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8353_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 34933671 - 34933376
Alignment:
| Q |
1 |
gtagaagaagaagaagctccaaggtatctatgtattttcattgcatgacagttttcgttcgtaatctcttgggttgaagcttcttataagtagaatgaga |
100 |
Q |
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| T |
34933671 |
gtagaagaagaagaagctccaacgtatctatgtattttcattgcatgatagttttcgttcgtaatctctagggttgaagcttcttataagtagaatgaga |
34933572 |
T |
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| Q |
101 |
agaatttgttgaatttgtctctctagggttgcattgcatgacagttttcgtttgtatctctttcaatcatattttcataatcgttgcttcattcgcaagg |
200 |
Q |
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| T |
34933571 |
agaatttgt---------ctctctagggttgcattgcatgacagttttcgtttgtatctctttcaatcatattttcataatcgttgcttcactcgcaagg |
34933481 |
T |
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| Q |
201 |
tatctatgtattttcattcttcttctttattttgtcaaaactcaagttgattatcatatatgtctctttctgttgttctctcatggaatgatttcaagta |
300 |
Q |
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| T |
34933480 |
tatctatgtattttcattcttcttctttattttgtcaaaactcaagttgattatcatatatgtctctttctgttgttctctcatggaatgatttcaagta |
34933381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 34927161 - 34926958
Alignment:
| Q |
6 |
agaagaagaagctccaaggtatctatgtattttcattgcatgacagttttcgttcgtaatctcttgggttgaagcttcttataagtagaatgagaagaat |
105 |
Q |
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| T |
34927161 |
agaagaagaagcttgaaggtatctatgtaatttcattgcatgacagttttttttcgtaatctctagggttgaagcttcttatacgtagaatgagaagaat |
34927062 |
T |
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| Q |
106 |
ttgttgaatttgtctctctagggttgcattgcatgacagttttcgtttgtatctctttcaatcatattttcataatcgttgcttcattcgcaaggtatct |
205 |
Q |
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| T |
34927061 |
ttgttgaacttgtctctctagggttgcattgcatgacagttttcgttcttatctctttcaatcttattttcatattcgttgcttcactctcaaggtatct |
34926962 |
T |
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| Q |
206 |
atgt |
209 |
Q |
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|||| |
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| T |
34926961 |
atgt |
34926958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 312
Target Start/End: Complemental strand, 34926941 - 34926902
Alignment:
| Q |
273 |
ttgttctctcatggaatgatttcaagtaatgaatgatgat |
312 |
Q |
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| T |
34926941 |
ttgttctctcatggaatgaatttaagtaatgaatgatgat |
34926902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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