View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8353_high_8 (Length: 273)
Name: NF8353_high_8
Description: NF8353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8353_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 37902992 - 37903233
Alignment:
| Q |
14 |
cagagagggggacaagaaaagtaaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgcaagagca |
113 |
Q |
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| T |
37902992 |
cagagagggggacaaaaaaaataaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgcaagagca |
37903091 |
T |
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| Q |
114 |
agagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaattgatagaataatcaaaacca |
213 |
Q |
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| T |
37903092 |
agagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaattgatagaataatcaaaacca |
37903191 |
T |
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| Q |
214 |
ataatgtaagcaacagtacaaggattgagtaggctgataatt |
255 |
Q |
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| T |
37903192 |
ataatgtaagcaacagtacaaggattgagtaggctgataatt |
37903233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 37909503 - 37909744
Alignment:
| Q |
14 |
cagagagggggacaagaaaagtaaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgcaagagca |
113 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909503 |
cagagagggggacaaaaaaaataaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgcaagagca |
37909602 |
T |
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| Q |
114 |
agagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaattgatagaataatcaaaacca |
213 |
Q |
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| T |
37909603 |
agagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaattgatagaataatcaaaacca |
37909702 |
T |
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| Q |
214 |
ataatgtaagcaacagtacaaggattgagtaggctgataatt |
255 |
Q |
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| T |
37909703 |
ataatgtaagcaacagtacaaggattgagtaggctgataatt |
37909744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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