View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8353_low_1 (Length: 724)
Name: NF8353_low_1
Description: NF8353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8353_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 198 - 715
Target Start/End: Complemental strand, 39732809 - 39732292
Alignment:
| Q |
198 |
gtcaactgaaatagaaagataaacatcatgaatagattcgggggataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttc |
297 |
Q |
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| T |
39732809 |
gtcaactgaaatagaaagataaacatcatgaatagattcgggggataccatttatagcccccaacatcaaatacatctgaacagagctttatctcgttcc |
39732710 |
T |
|
| Q |
298 |
tccaagaaaatctttcaattctccatgtgaatttaaatggagaaggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctac |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39732709 |
tccaagaaaatctttcaattctccatgtgaatttaaatggagaaggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctac |
39732610 |
T |
|
| Q |
398 |
taatgttgataaacataaatgaaaagagcaattaagtaagtatcaagacttgaattatctgaaaacttggagaggtaaaacaaataagagtagtcccgca |
497 |
Q |
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| T |
39732609 |
taatgttcataaaaataaatgaaaagagcaattaagtaagtatcaagacttgaattatctgaaaacttggagaggtaaaacaaataagagtagtcccgca |
39732510 |
T |
|
| Q |
498 |
gatgcttagtccagcaatgtagaatggctaaagaagtacatgaacatgattggtgtatatgtcttgagtttgtgaatatgattttgaagttcatgaacca |
597 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39732509 |
gatgtttagtccagcaatgtagaatggctaaagaagtacatgaacatgattggtgtatatgtcatgagtttgtgaatatgattttgaagttcatgaacca |
39732410 |
T |
|
| Q |
598 |
tataccaaaataagcccacataaccgtatcgtaaatcattcatccgtgtttaccagattgacttatggacctttaagttacatattacctatgaagcatg |
697 |
Q |
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| T |
39732409 |
tataccaaaataagcccacataaccgtatcgtaaatcattcatccgtgtttaccagattgacttatggacctttaagttacatattacctatgaagcatg |
39732310 |
T |
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| Q |
698 |
gactccgacacgaacacc |
715 |
Q |
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| T |
39732309 |
gactccgacacgaacacc |
39732292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 39733023 - 39732840
Alignment:
| Q |
19 |
gcaacgccaaaatacatggacaaatggtccatcgcattgtccccttctgggaaaataattacatgcctgatcagataaaagaaaaaacattagaagggat |
118 |
Q |
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| T |
39733023 |
gcaacgccaaaatacatggacaaatggtccatcgcattgtccccttctgggaaaataattacatgcctgatcagataaaagaaaaaacattagaagggat |
39732924 |
T |
|
| Q |
119 |
cacagatgataaatacacacaggaactaatgtaacaactacaacaaaatcacttcctccaatagatagaatctacatgggtcaa |
202 |
Q |
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| T |
39732923 |
cacagatgataaatacacacaggaactaatgtaacaactacaacaaaatcagttcctccaatagatagaatctacatggctcaa |
39732840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 242 - 433
Target Start/End: Original strand, 37476844 - 37477029
Alignment:
| Q |
242 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaatttaaatggagaa |
341 |
Q |
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||||||||| || | ||||||| |||||||||||||| |||||||| || ||| || |||||| | |||||||||||||||||| | |||| ||| |
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| T |
37476844 |
ataccatttgtaactcccaacaacaaatacatctgaatagagctttttcaaattcaccctagaaaagttgtcaattctccatgtgaatcttgatggtgaa |
37476943 |
T |
|
| Q |
342 |
ggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctactaatgttgataaacataaatgaaaagagcaattaag |
433 |
Q |
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| T |
37476944 |
ggatcctcgacaggct------ccacagtgttggcagtttcaggttgagcaaccactaatgttcatgaatataaatgaaaagagcaattaag |
37477029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 39867959 - 39868122
Alignment:
| Q |
28 |
aaatacatggacaaatggtccatcgcattgtccccttctgggaaaataattacatgcctgatcagat----aaaagaaaaaacattagaagggatcacag |
123 |
Q |
| |
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||||||||||||||||||||| | |||||| ||||| |||||||| || |||| ||||| || || |||| ||||| |||||||| || ||| |
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| T |
39867959 |
aaatacatggacaaatggtccgacacattgttcccttttgggaaaagaagtacacgcctgctccgagtaagaaaaaaaaaagaattagaagtgaacactt |
39868058 |
T |
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| Q |
124 |
atgataaatacacacaggaactaatgtaacaactacaacaaaatcacttcctccaatagataga |
187 |
Q |
| |
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| |||||||||||| |||||||||| ||||| |||||||||||| |||||| ||| |||||||| |
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| T |
39868059 |
aagataaatacacataggaactaatataacagctacaacaaaatgacttccgccactagataga |
39868122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 39901566 - 39901618
Alignment:
| Q |
135 |
acacaggaactaatgtaacaactacaacaaaatcacttcctccaatagataga |
187 |
Q |
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| T |
39901566 |
acacaggaactaaaataacaactacaacaaaatcacttcctacaatagataga |
39901618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 242 - 329
Target Start/End: Original strand, 39868226 - 39868313
Alignment:
| Q |
242 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaat |
329 |
Q |
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| T |
39868226 |
ataccatttgtaacccccaacttcaaatacatctgaatagagctttattgtatttatcgaagaaaatcccccaattctccatgtgaat |
39868313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 242 - 329
Target Start/End: Original strand, 39901700 - 39901787
Alignment:
| Q |
242 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaat |
329 |
Q |
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||||||||||||||| ||||| ||||||||||||||| ||| || | || ||||| || ||||||||| |||||| ||||| ||||| |
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| T |
39901700 |
ataccatttatagccaccaacttcaaatacatctgaatagatctctctcgcatttttctgagaaaatctgtcaattgtccatttgaat |
39901787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 39913661 - 39913702
Alignment:
| Q |
242 |
ataccatttatagcccccaacatcaaatacatctgaacagag |
283 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||| |||| |
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| T |
39913661 |
ataccatttatagcccccagcttcaaatacatctgaatagag |
39913702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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