View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8353_low_10 (Length: 326)
Name: NF8353_low_10
Description: NF8353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8353_low_10 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 326
Target Start/End: Original strand, 5774304 - 5774615
Alignment:
| Q |
11 |
acatcatcatggaaagaagaaaggtgaaaaatcagagatgaagcacatgtgcgtgtgcagaaatttttcaaatgcctaggtgaaatactattatatatat |
110 |
Q |
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| T |
5774304 |
acatcatcatggaaagaagaaaggttaaaaatcagagatgaagcacatgtgtgtgtgcagaaatttttcaaatgcctaggtgaaatactattatata--- |
5774400 |
T |
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| Q |
111 |
aactttactcattcgattagttacattctaaataacacaaaatttccacaannnnnnnnnataactgacctgagtttctttaacagtgtatctctcaagt |
210 |
Q |
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| T |
5774401 |
-actttactcattcgattagttacattctaaataacacaaaatttccacaattcctttttataactgacctgagtttctttaacagtgtatctctcaagt |
5774499 |
T |
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| Q |
211 |
acggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcacaca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5774500 |
acggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcataca |
5774599 |
T |
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| Q |
311 |
ctaacaacagttacct |
326 |
Q |
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| T |
5774600 |
ctaacaacagttacct |
5774615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 171 - 326
Target Start/End: Original strand, 5768189 - 5768344
Alignment:
| Q |
171 |
ataactgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatctt |
270 |
Q |
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| T |
5768189 |
ataactgacctgagtttctttaacggtgtatctctcgagtaaggttttcttctcattgtcggtcagcacctgatgttctggcacaagctcgtgatatctt |
5768288 |
T |
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| Q |
271 |
acattaaccagcaattcagcctcctgcaagcacgcacacactaacaacagttacct |
326 |
Q |
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| T |
5768289 |
acgttaaccagcaattcagcctccttcaagaacgcatacactaacaacggttacct |
5768344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 295
Target Start/End: Complemental strand, 465800 - 465679
Alignment:
| Q |
174 |
actgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttaca |
273 |
Q |
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||||||||||||||| || ||||||||||||||||| | |||||||||||| ||||| | || | ||||||||| ||||||||| || | | ||| | |
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| T |
465800 |
actgacctgagtttccttgacagtgtatctctcaagcaaggttttcttctcggtgtcattgagaatctgatgttcaggcacaagcacatgctcttttata |
465701 |
T |
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| Q |
274 |
ttaaccagcaattcagcctcct |
295 |
Q |
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||||||||||| || ||||||| |
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| T |
465700 |
ttaaccagcaactctgcctcct |
465679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 5768137 - 5768171
Alignment:
| Q |
116 |
tactcattcgattagttacattctaaataacacaa |
150 |
Q |
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| T |
5768137 |
tactcattcgattagtcacattctaaataacacaa |
5768171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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