View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8353_low_11 (Length: 321)
Name: NF8353_low_11
Description: NF8353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8353_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 311
Target Start/End: Complemental strand, 48044458 - 48044153
Alignment:
| Q |
6 |
ggagaagcagagaggagtgaaagcatcttaagcttgggtctcacacatgacacaacctaattgatcaactgcattctcacaaggggtcaaatgtttgtcg |
105 |
Q |
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| T |
48044458 |
ggagacgcacagaggagtgaaagcatcttaagcttgggtctcacacatgacacaacctaattgatcaactgcattctcacaaggggtcaaatgtttgtcg |
48044359 |
T |
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| Q |
106 |
aacaggaaaggttggagaaacataggtcccatgaacaatcttgtttcaagcctcaccttactagctattaattgactcggagaattattcaaatcaaatt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48044358 |
aacaggaaaggttggagaaacataggtcccatgaacaatcttgtttcaagcctcaccttactagctattaattgactctgagaattattcaaatcaaata |
48044259 |
T |
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| Q |
206 |
agcgtgacctatctccctctctatgttgatgtggcattttgccatgttatttaccagcaaataaaatgaataaaagagtgatgtcacgtcaccaaatggc |
305 |
Q |
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| T |
48044258 |
agcgtgacctatctccctctctatgttgatgtggcattttgccatgttatttaccagcaaataaaatgaataaaagagtgatggcacgtcaccaaatggc |
48044159 |
T |
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| Q |
306 |
atgtca |
311 |
Q |
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|||||| |
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| T |
48044158 |
atgtca |
48044153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 48051958 - 48051848
Alignment:
| Q |
201 |
aaattagcgtgacctatctccctctctatgttgatgtggcattttgccatgttatttaccagcaaataaaatgaataaaagagtgatgtcacgtcaccaa |
300 |
Q |
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|||||||| ||| |||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48051958 |
aaattagcatgatctatctccctctatatgctgatgtggcacactgccatgttattttccagcaaataaaatgaataaaagagtgatggcacgtcaccaa |
48051859 |
T |
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| Q |
301 |
atggcatgtca |
311 |
Q |
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| T |
48051858 |
atggcatgtca |
48051848 |
T |
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