View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8353_low_15 (Length: 228)
Name: NF8353_low_15
Description: NF8353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8353_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 25 - 212
Target Start/End: Complemental strand, 48602564 - 48602377
Alignment:
| Q |
25 |
taccaatattaatgatttgatatgatttctagtaaagttgacttcacggtctttctcactgtagacatctagcaaaatgtcaagaaaatctttcagtctc |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48602564 |
taccaatattaatgatttgatatgatttctagtaaagttgacttcacggtctttctcactgtagacatctagcaaaatgtcaagaaaatctttcagtctc |
48602465 |
T |
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| Q |
125 |
tcttcttcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaag |
212 |
Q |
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| T |
48602464 |
tcttcttcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaag |
48602377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 48592876 - 48592682
Alignment:
| Q |
18 |
atatacataccaatattaatgatttgatatgatttctagtaaagttgacttcacggtctttctcactgtagacatctagcaaaatgtcaagaaaatcttt |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592876 |
atatacgtaccaatattaatgatttgatatgatttctagtaaagttgacttcacagtttttctcactgtagacatctagcaaaatgtcaagaaaatcttt |
48592777 |
T |
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| Q |
118 |
cagtctctcttcttcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaag |
212 |
Q |
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| T |
48592776 |
cagtctctcttcttcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaag |
48592682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 23231463 - 23231650
Alignment:
| Q |
25 |
taccaatattaatgatttgatatgatttctagtaaagttgacttcacggtctttctcactgtagacatctagcaaaatgtcaagaaaatctttcagtctc |
124 |
Q |
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|||||| || ||||||||||||||| |||||||||| ||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
23231463 |
taccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttctcctcaaagacattaagcaaaatgtcaagaaaatctttcagtctc |
23231562 |
T |
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| Q |
125 |
tcttcttcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23231563 |
tcttcttcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaag |
23231650 |
T |
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