View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8353_low_18 (Length: 205)
Name: NF8353_low_18
Description: NF8353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8353_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 29351618 - 29351452
Alignment:
| Q |
25 |
gtattttacatgggcaattttaaaaattaacctataatgaaattccaggtttgattaaagtagggatagtgctgattatacctgtaactaatggtgaatt |
124 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29351618 |
gtattttacatggtcaatttaaacaattaacctataataaaattccaggtttgatttaagtagggatagtgctgattatacctgtacctaatggtgaatt |
29351519 |
T |
|
| Q |
125 |
agtgataaggtgatttacaatatgagaagggaatgtgtttgaattttgaagaagagctagggatgat |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29351518 |
agtgataaggtgatttacaatatgagaagggaatgtgtttgaattttgaagaagagctagggatgat |
29351452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 73 - 184
Target Start/End: Complemental strand, 30870353 - 30870242
Alignment:
| Q |
73 |
gtttgattaaagtagggatagtgctgattatacctgtaactaatggtgaattagtgataaggtgatttacaatatgagaagggaatgtgtttgaattttg |
172 |
Q |
| |
|
||||||| | |||||||||||||| |||||||| |||| ||||||||||||| ||| | | |||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
30870353 |
gtttgatgagagtagggatagtgcagattatacttgtacctaatggtgaatttgtggtcatgtgatttacactatgagaaggcaatgtgtttgaattttg |
30870254 |
T |
|
| Q |
173 |
aagaagagctag |
184 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30870253 |
aagaagagctag |
30870242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 33305667 - 33305568
Alignment:
| Q |
90 |
atagtgctgattatacctgtaactaatggtgaattagtgataaggtgatttacaatatgagaagggaatgtgtttgaattttgaagaagagctagggatg |
189 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||| || ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
33305667 |
atagtgcatattatacatgtgcctaatggtgaattgctggtaatatgatttacactatgagaaggcaatgtgtttgaattttgaagaagagctagcgatg |
33305568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University