View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8353_low_4 (Length: 463)
Name: NF8353_low_4
Description: NF8353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8353_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 5775036 - 5774592
Alignment:
| Q |
1 |
aggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggttaacatgtcgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5775036 |
aggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggttaacatgtcgaa |
5774937 |
T |
|
| Q |
101 |
agaagagttcaaggagaaatatggggagcacatgaagagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagatttatgtcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774936 |
agaagagttcaaggagaaatatggggagcacatgaatagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagatttatgtcttc |
5774837 |
T |
|
| Q |
201 |
ttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatcgtttgccagacca |
300 |
Q |
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| T |
5774836 |
ttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatcgtttgccagacca |
5774737 |
T |
|
| Q |
301 |
gccttactaacatggcatggaacagtatctctcagttcgactccaaatatcatttggaagtttttcaggtaattcatcattcgatcgatcgatcaatcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
5774736 |
gccttactaacatggcatggaacagtatctctcagttcgactccaaatttcatttggaagtttttcaggtaattcatca----atcgatcaatcaatcaa |
5774641 |
T |
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| Q |
401 |
attctgtggtggttgtttatggttgaggtaactgttgttagtgtgtgcg |
449 |
Q |
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| T |
5774640 |
attctgtggtggttgtttatggttgaggtaactgttgttagtgtatgcg |
5774592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 5768756 - 5768321
Alignment:
| Q |
1 |
aggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggttaacatgtcgaa |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768756 |
aggatgaaatatctaagctgtataggatccggaagacggtgatggagatgcttagagataggaattacctcgtaggagattttgaggttaacatgtcgaa |
5768657 |
T |
|
| Q |
101 |
agaagagttcaaggagaaatatggggagcacatgaagagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagatttatgtcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768656 |
agaagagttcaaggagaaatatggggagcacatgaatagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagatttatgtcttc |
5768557 |
T |
|
| Q |
201 |
ttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatcgtttgccagacca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
5768556 |
ttcccggaggatgagaaggttggcgtccacaccttcaggacttgcaccaaacgtatgaactccgagaatgtctacagagccatcatcgtttgccagacca |
5768457 |
T |
|
| Q |
301 |
gccttactaacatggcatggaacagtatctctcagttcgactccaaatatcatttggaagtttttcaggtaattcatcattcgatcgatcgatcaatcaa |
400 |
Q |
| |
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||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||||| ||| ||| ||||||||| |
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| T |
5768456 |
gccttactaacatggca---------ctctctgaaatcgactccaaatttcatttggaagtttttcaggtaattcatca----atccatcaatcaatcaa |
5768370 |
T |
|
| Q |
401 |
attctgtggtggttgtttatggttgaggtaactgttgttagtgtgtgcg |
449 |
Q |
| |
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||| ||||||||||||| |||||||||||||| ||||||||||| |||| |
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|
| T |
5768369 |
attttgtggtggttgttaatggttgaggtaaccgttgttagtgtatgcg |
5768321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 5775411 - 5775102
Alignment:
| Q |
1 |
aggatgaaatatcgaagctgtataggatccggaagacggtgatggagatgcttagggataggaattacctcgtaggagattttgaggttaacatgtcgaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||||||||||| |||||| ||||| || |
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| T |
5775411 |
aggatgaaatatcaaagctgtataggatccggaagaaggtgatggagatgcttcgcgacaggaattacctcgtaggagatttcgaggtttgtatgtcaaa |
5775312 |
T |
|
| Q |
101 |
agaagagttcaaggagaaatatggggagcacatgaagagagaagaccttgtcatcaacaaggcgaaaaaggacaatccctctgaccagatttatgtcttc |
200 |
Q |
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| ||||||||||||||| |||||| ||| || ||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||| ||| |
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| T |
5775311 |
acaagagttcaaggagacatatggtgagaacttgaagagagaagaccttgtcatcaagaaagccaaaaaagacaatccctctgaccagatttatgtgttc |
5775212 |
T |
|
| Q |
201 |
ttcccggaggatgagaaggttggcgtccacaccttcaggacttacaccaaacgcatgaactcggagaatgtctacagggccatcatcgtttgccagacca |
300 |
Q |
| |
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|| || ||| |||| ||||||| |||||||||||| |||||||||||||| || ||| ||| || ||||||||||| |||||| ||||||||||||||| |
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| T |
5775211 |
tttcctgagaatgataaggttgacgtccacaccttaaggacttacaccaatcgtatgtcctccgacaatgtctacagagccatcgtcgtttgccagacca |
5775112 |
T |
|
| Q |
301 |
gccttactaa |
310 |
Q |
| |
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|||||||||| |
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|
| T |
5775111 |
gccttactaa |
5775102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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