View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8353_low_5 (Length: 441)
Name: NF8353_low_5
Description: NF8353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8353_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 124 - 422
Target Start/End: Original strand, 50531268 - 50531565
Alignment:
| Q |
124 |
gcttacggaaatgaaatttgaagtctataccttttacagctcaaaacttttattacaagtcaaatttctgaggactttccttaaattttaaaaaattgat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
50531268 |
gcttacggaaatgaaatttgaagtctataccttttacagctcaaaacttttattacaagtcaaatttctgaggactttccttaaattttaaaaatttgat |
50531367 |
T |
|
| Q |
224 |
tcctttagccataatagattgctgaccgtgtttaccaaagnnnnnnnnnnttctaaccatgttatgcattaagtggataacttaatccacaagtcctttt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50531368 |
tcctttagccataatagattgctgaccgtgtttaccaaagaaaaaaaaa-ttctaaccatgttatgcattaagtggataacttaatccacaagtcctttt |
50531466 |
T |
|
| Q |
324 |
attattttgattccaattaatttcaatgtatgtaaaaatcactttcatgtacgaaagaggtccttaattagattgttgtcaaatgtcacataacaacac |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50531467 |
attattttgattccaattaatttcaatgtatgtaaaaatcactttcatgtacgaaagaggtccttaattagattgttgtcaaacgtcacataacaacac |
50531565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 50531119 - 50531225
Alignment:
| Q |
1 |
aacctttaaccatcgttttatttttgttaaaaagaaaactatttacttaaatacaaacccttaccacttagattggtcgcatgcaagtaaatatgacctt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50531119 |
aacctttaaccatcattttatttttgttaaaaagaaaactatttacttaaatacaaacccttaccacttagattggtcgcatgcaagtaaatatgacctt |
50531218 |
T |
|
| Q |
101 |
cattcaa |
107 |
Q |
| |
|
||||||| |
|
|
| T |
50531219 |
cattcaa |
50531225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University