View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8353_low_6 (Length: 430)
Name: NF8353_low_6
Description: NF8353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8353_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 215 - 407
Target Start/End: Original strand, 30930488 - 30930680
Alignment:
| Q |
215 |
ctttccttcatcccaagaaaccctgaatttccctaatctctaatcactgcaaaatcaaaaagcaataatctctgaaaaatatgtatttcacgttcgtata |
314 |
Q |
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| T |
30930488 |
ctttctttcatcccaagaaaccctgaatttccctaatctctaatcactgcaaaataaaaaagcaataatctctgaaaaatatgtatttcacgttcgtata |
30930587 |
T |
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| Q |
315 |
cccttacatgtttcgtcgtttccattcgccactgtttccggttctctcgttattcagaaaaagcaactcagctctcttcttcaaacccagtta |
407 |
Q |
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| T |
30930588 |
cccttacatgtttcgtcgtttccattcgccactgtttccggttctctcgttattcagaaaaagcaactcagctctcttcttcaaacccagtta |
30930680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 30929288 - 30929431
Alignment:
| Q |
1 |
gaccaaataattgacctaaacaagtaaaatcattctccctctttcttccccttactttctctttctaaaaatcacatttcctttcccttctgctttataa |
100 |
Q |
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| T |
30929288 |
gaccaaataattgacctaaacaagtaaaatcattctccctctctcttccccttactttctctttctaaaaatcacatttcctttcccttctgctttatca |
30929387 |
T |
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| Q |
101 |
attatgtagtttctcattgttttgagttaatttgtttatggttt |
144 |
Q |
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| T |
30929388 |
attatgtagtttctcattgttttgagttaatttgtttatggttt |
30929431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 30929699 - 30929744
Alignment:
| Q |
180 |
cataacaacactcatatagattcgcaaaaggatatctttccttcat |
225 |
Q |
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| T |
30929699 |
cataacaacactcatatagattcgcaaaaggatatctttccttcat |
30929744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 30931779 - 30931845
Alignment:
| Q |
91 |
tgctttataaattatgtagtttctcattgttttgagttaatttgtttatggtttgctctatgtagtg |
157 |
Q |
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| T |
30931779 |
tgctttatcaactttgtagtttctcattatttagatttaatttgtttatgatttgctctatgtagtg |
30931845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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