View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8353_low_7 (Length: 405)
Name: NF8353_low_7
Description: NF8353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8353_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 27 - 405
Target Start/End: Complemental strand, 35408734 - 35408356
Alignment:
| Q |
27 |
agagaagaaatcctgaccgtccaatacgtgaataatctgggtctgttgtcaccataaagctccggactgacctgactagtagaataatcaaagctttaga |
126 |
Q |
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| T |
35408734 |
agagaagaaatcctgaccgtccaatacgtgaataatctgggtctgttgtcaccataaagctccggactgacctgactaatagaataatcaaagctttaga |
35408635 |
T |
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| Q |
127 |
aaccatttcattaaataaaattagtatatttctgtttctat-cattgaatataataatatgttccgtgttaccgaagtatcacatgtaatctaattaata |
225 |
Q |
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| T |
35408634 |
aaccatttcattaaataaaattagtatatttctgtttctatacattgaatataataatatgttccgtgttaccgaagtatcacatataatctaattaata |
35408535 |
T |
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| Q |
226 |
catgaaatgttgcttcaaggaaccaactgaaatagttggaaaataatcttaatactatgtaatgtaactacattnnnnnnnnttgaaatactagaagtca |
325 |
Q |
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| T |
35408534 |
catgaaatgttgcttcaaggaaccaactgaaatagttggaaattaatcttaattctatgtaatgtaactacatt-aaaaaaattgaaatactagaagtca |
35408436 |
T |
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| Q |
326 |
gaaggagtacctgccatccagcttcgatgctgttaagatcaggaccatcgaaagaaccagagaggacccaaatttgagag |
405 |
Q |
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| T |
35408435 |
gaaggagtacctgccatccagcttcgatgctgttaagatcaggaccatcgaaagaaccagagaggacccaaatttgagag |
35408356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 48018462 - 48018535
Alignment:
| Q |
33 |
gaaatcctgaccgtccaatacgtgaataatctgggtctgttgtcaccataaagctccggactgacctgactagt |
106 |
Q |
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| T |
48018462 |
gaaatgctaaccgtccagtaagtaaataatctgggtctgctgtcaccataaagctccggactgacctaactagt |
48018535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 365
Target Start/End: Complemental strand, 36692200 - 36692166
Alignment:
| Q |
331 |
agtacctgccatccagcttcgatgctgttaagatc |
365 |
Q |
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| T |
36692200 |
agtacctgccagccagcttcgatgctgttaagatc |
36692166 |
T |
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