View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8353_low_8 (Length: 387)
Name: NF8353_low_8
Description: NF8353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8353_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 26026660 - 26026292
Alignment:
| Q |
1 |
cctggaggtggggcccaatggcgatactgagccacgtgtcgactgagtaagcaaataatggattgtttgggatgtggtcggaggacagacggaacttccg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26026660 |
cctggaggtggggcccaatggcgatactgagccacgtgtcgactgagtaagcaaataatggattgtttgggatgtggtcggaggagagacggaacttccg |
26026561 |
T |
|
| Q |
101 |
aacgacgcgtgagcgacggagagagaggacagtgttgacgaaaacggtgaacagcatgaattgttcgttgaattcgtcgtcgggggcttggtagctgtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26026560 |
aacgacgcgtgagcgacggagagagaggacagtgttgacgaaaacggtgaacagcatgaattgttcgttgaattcgtcgtcgggggcttggtagctgtat |
26026461 |
T |
|
| Q |
201 |
tcattgcatttgtcgcggaaatcgaagacttcgagattcttccagaggttgcgccatttgcgagagacgaagctcatatgaacggaggttttggtcggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26026460 |
tcattgcatttgtcgcggaaatcgaagacttcgagattcttccagaggttgcgccatttgcgagagacgaagctcatatgaacggaggttttggtcggaa |
26026361 |
T |
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| Q |
301 |
ggaaggagagaatgtgacacaataaggaatttgatagagtgctaattctgtcaatgccatcgttgttct |
369 |
Q |
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| T |
26026360 |
ggaaagagagaatgtgacacaataaggaatttgatagagtgctaattctgtcaatgccatcgttgttct |
26026292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 87 - 364
Target Start/End: Complemental strand, 24933717 - 24933440
Alignment:
| Q |
87 |
agacggaacttccgaacgacgcgtgagcgacggagagagaggacagtgttgacgaaaacggtgaacagcatgaattgttcgttgaattcgtcgtcggggg |
186 |
Q |
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| T |
24933717 |
agacggaacttccgaatgacgcgtgagcgacgaagagagaggacagtgttgacgaaaacggtgaacaacataaattgttcgttgtattcgtcgtctggac |
24933618 |
T |
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| Q |
187 |
cttggtagctgtattcattgcatttgtcgcggaaatcgaagacttcgagattcttccagaggttgcgccatttgcgagagacgaagctcatatgaacgga |
286 |
Q |
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|||||||| |||| || | ||| |||||| |||||| |||||| |||||| |||||||||| | ||| |||||||||||||||| |||||| | ||||| |
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| T |
24933617 |
cttggtaggtgtactcgtcgcagttgtcgtggaaattgaagacgtcgagagtcttccagagatggcggcatttgcgagagacgaggctcatgtcgacgga |
24933518 |
T |
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| Q |
287 |
ggttttggtcggaaggaaggagagaatgtgacacaataaggaatttgatagagtgctaattctgtcaatgccatcgtt |
364 |
Q |
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| T |
24933517 |
ggttttggtagggaggaaggagagaatgtgacatagtaaggaatttggtagagtggtgagtctgtcaatgccttcgtt |
24933440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 24529337 - 24529295
Alignment:
| Q |
109 |
gtgagcgacggagagagaggacagtgttgacgaaaacggtgaa |
151 |
Q |
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| T |
24529337 |
gtgagctacggagagcgaggacagcgttgacgaaaacggtgaa |
24529295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 40585496 - 40585437
Alignment:
| Q |
211 |
tgtcgcggaaatcgaagacttcgagattcttccagaggttgcgccatttgcgagagacga |
270 |
Q |
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| T |
40585496 |
tgtcgcagaaatccaaggcttcgagattcttccatagattgcgccatttgcgagaaacga |
40585437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 40585611 - 40585530
Alignment:
| Q |
87 |
agacggaacttccgaacgacgcgtgagcgacggagagagaggacagtgttgacgaaaacggtgaacagcatgaattgttcgt |
168 |
Q |
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|||| |||||||||||| ||||| || ||||||| ||||||||||||||||||||||| ||| | || ||| ||||||| |
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| T |
40585611 |
agacagaacttccgaacaacgcgagatttgcggagagtgaggacagtgttgacgaaaacggagaagatcaagaactgttcgt |
40585530 |
T |
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