View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8354_high_1 (Length: 537)
Name: NF8354_high_1
Description: NF8354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8354_high_1 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 526
Target Start/End: Complemental strand, 4065132 - 4064630
Alignment:
| Q |
19 |
ggttggaagcctcttttagagggataagttaagttgaatacagatgactgttgtagagataataggttagctggttgtggtggtgttttctgtagaagtg |
118 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || || ||||||||| |
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| T |
4065132 |
ggttggaagcctcttttagagggacgagttaagttgaatacggatgactgttgtagagataatgggttagctggttgtggtggttttatccgtagaagtg |
4065033 |
T |
|
| Q |
119 |
atggggaatggttggtgactttgctaaatgtgttggtatgtgtagcgcctatttggcttagcattgtggagtatttgaaggtttgaagtatgcgagaaag |
218 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4065032 |
atggggaatggttggtgactttgctaaatgtgttggtatgtgtagcgcctatttggcatagcattgtggagtatttgaaggtttgaagtatgcgag-aag |
4064934 |
T |
|
| Q |
219 |
gttaggatttagagcaattaaattgaatgtggattctctaaaggtttctagtgagaatggaagcctgattgatagatctttagttgtgaagattcttcga |
318 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4064933 |
gttaggatttagagcaattaaattgaatgtggattctctaaaggtttctagtgagaatgaaagcctgattgatagatctttagttgtgaagattcttcga |
4064834 |
T |
|
| Q |
319 |
ttgcttgacttggagtgagaggtagtggagcatcgctcttaccatgaagccgatcagtgtgatgatgtcttggcaaaattcaaatgcttgatggcaatat |
418 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| | |||| |
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| T |
4064833 |
ttgcttgacttg----gagaggtagtggtgcatcgctcttaccatgaagccaataagtgtgatgatgtcttggcaaaattcagatgcttgatgccgatat |
4064738 |
T |
|
| Q |
419 |
tgtttattacgagacttgtccaactcaattctctcttttggttgatgctgctgttaggggatttatcgccccgtgtttagttcctttgtagactgtcttt |
518 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
4064737 |
tgtttattatgagacttgtccaactcaattctctcttttggttgatgccgatgttaggggatttatcgccccgtgattagttcctttgtagtctgtcttt |
4064638 |
T |
|
| Q |
519 |
tttctttt |
526 |
Q |
| |
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||| |||| |
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| T |
4064637 |
tttttttt |
4064630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 9866100 - 9865947
Alignment:
| Q |
18 |
aggttggaagcctcttttagagggataagttaagttgaatacagatgactgttgtagagataataggttagctggttgtggtggtgttttctgtagaagt |
117 |
Q |
| |
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|||| ||||||||| |||| ||||| |||||||||||||| ||| | | || ||||| |||| ||||| | ||||||||||||||| | || ||||| |
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| T |
9866100 |
aggtaggaagcctcctttaccgggatgggttaagttgaatacggataattcttatagaggtaatgggttacccggttgtggtggtgttaaccgtggaagt |
9866001 |
T |
|
| Q |
118 |
gatggggaatggttgg-tgactttgctaaatgtgttggtatgtgtagcgcctat |
170 |
Q |
| |
|
||||| |||||||||| || |||||||||| |||||| |||||||||||||||| |
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|
| T |
9866000 |
gatggtgaatggttggatggctttgctaaaggtgttgatatgtgtagcgcctat |
9865947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 462
Target Start/End: Complemental strand, 9865854 - 9865697
Alignment:
| Q |
301 |
gttgtgaagattcttcgattgcttgacttggagtgagaggtagtggagcatcgctcttaccatgaagccgatcagtgtgatgatgtcttggcaaaattca |
400 |
Q |
| |
|
||||||||||||| | |||||||||| |||||||| ||| ||||| || ||||||| ||||||| |||||| || | |||||||| |||| |||| |
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| T |
9865854 |
gttgtgaagattcgttgattgcttgagttggagtgggagatagtg-aga----ctcttactgtgaagccaatcagtatgttaatgtcttgacaaacttca |
9865760 |
T |
|
| Q |
401 |
aatgcttga-tggcaatattgtttattacgagacttgtccaactcaattctctcttttggttg |
462 |
Q |
| |
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|| ||||| || | |||||||||||||| ||| || |||||||||||| ||||||||||||| |
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| T |
9865759 |
gattcttgaatgtcgatattgtttattactagagttctccaactcaattatctcttttggttg |
9865697 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 500
Target Start/End: Complemental strand, 6746305 - 6746220
Alignment:
| Q |
415 |
atattgtttattacgagacttgtccaactcaattctctcttttggttgatgctgctgttaggggatttatcgccccgtgtttagtt |
500 |
Q |
| |
|
||||||||||||| | |||||| || ||| |||||||||||||| |||||||| |||||||||||||| |||||| ||||||| |
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| T |
6746305 |
atattgtttattatgcgacttgcccggctcgattctctcttttggctgatgctgatgttaggggatttactgccccgcatttagtt |
6746220 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 24184846 - 24184734
Alignment:
| Q |
19 |
ggttggaagcctcttttagagggataa--gttaagttgaatacagatgactgttgtagagataataggttagctggttgtggtggtgttttctgtagaag |
116 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||| ||| || | ||||||||||| |||||||||||||||||||| | | || |||| |
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| T |
24184846 |
ggttggaagcctcctttagagggatataggttaagttgaatacaaatggctctcgtagagataatgagttagctggttgtggtggtgatattggtggaag |
24184747 |
T |
|
| Q |
117 |
tgatggggaatgg |
129 |
Q |
| |
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|||||| |||||| |
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| T |
24184746 |
tgatggtgaatgg |
24184734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 406
Target Start/End: Original strand, 2613720 - 2613857
Alignment:
| Q |
270 |
tgagaatggaagcctgattgatagatctttagttgtgaagattcttcgattgcttgacttggagtgagaggtagtggagcatcgctcttaccatgaa-gc |
368 |
Q |
| |
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|||||||||||| || ||| ||||||||||||| ||||||||| ||||||| |||| ||||||||| |||| | || | ||| ||||||||||||| |
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| T |
2613720 |
tgagaatggaagtctaatttgtagatctttagttatgaagattcatcgattgtttgagttggagtgaaaggttgcggtgaatcactcttaccatgaattt |
2613819 |
T |
|
| Q |
369 |
cgatcagtgtgatgatgtcttggcaaaattcaaatgct |
406 |
Q |
| |
|
| |||| |||| ||||| ||||||||||||| ||||| |
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| T |
2613820 |
caatcaatgtgttgatgctttggcaaaattcagatgct |
2613857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 256
Target Start/End: Complemental strand, 24184724 - 24184639
Alignment:
| Q |
170 |
tttggcttagcattgtggagtatttgaaggtttgaagtatgcgagaaaggttaggatttagagcaattaaattgaatgtggattctc |
256 |
Q |
| |
|
|||||| |||| ||| | ||| |||||||||||||||||||| || |||||| ||||| | |||| | |||||||||||||||||| |
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|
| T |
24184724 |
tttggcatagctttgggtagtgtttgaaggtttgaagtatgcaag-aaggttcggattcaaagcagatgaattgaatgtggattctc |
24184639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 388
Target Start/End: Original strand, 2992816 - 2992905
Alignment:
| Q |
299 |
tagttgtgaagattcttcgattgcttgacttggagtgagaggtagtggagcatcgctcttaccatgaagccgatcagtgtgatgatgtct |
388 |
Q |
| |
|
|||||||||||||| || |||| |||||||||| || ||||||||| ||||| |||||||||||||||| |||| |||| |||||||| |
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| T |
2992816 |
tagttgtgaagatttgtccattgtttgacttggaatgggaggtagtgatgcatcactcttaccatgaagccaatcaatgtgctgatgtct |
2992905 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 388
Target Start/End: Original strand, 18359201 - 18359290
Alignment:
| Q |
299 |
tagttgtgaagattcttcgattgcttgacttggagtgagaggtagtggagcatcgctcttaccatgaagccgatcagtgtgatgatgtct |
388 |
Q |
| |
|
|||||||||||||| || |||| |||||||||| || ||||||||| ||||| |||||||||||||||| |||| |||| |||||||| |
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|
| T |
18359201 |
tagttgtgaagatttgtccattgtttgacttggaatgggaggtagtgatgcatcactcttaccatgaagccaatcaatgtgctgatgtct |
18359290 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 448 - 500
Target Start/End: Original strand, 21110 - 21162
Alignment:
| Q |
448 |
tctctcttttggttgatgctgctgttaggggatttatcgccccgtgtttagtt |
500 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
21110 |
tctctctcttggttgatgctgatgttaggggatttactgccccacgtttagtt |
21162 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 448 - 500
Target Start/End: Original strand, 16431128 - 16431180
Alignment:
| Q |
448 |
tctctcttttggttgatgctgctgttaggggatttatcgccccgtgtttagtt |
500 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||| ||||| |||||||| |
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|
| T |
16431128 |
tctctctcttggttgatgctgatgttaggggatttactgccccacgtttagtt |
16431180 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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