View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8354_high_12 (Length: 231)
Name: NF8354_high_12
Description: NF8354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8354_high_12 |
 | |
|
| [»] chr5 (8 HSPs) |
| |
|
| [»] chr8 (8 HSPs) |
| |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
| [»] chr4 (7 HSPs) |
| |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12531608 - 12531378
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12531608 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
12531509 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
12531508 |
aacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcggtgctc |
12531409 |
T |
|
| Q |
201 |
ttctgatacttgcggatctcacgaagtgcaa |
231 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
12531408 |
ttctggtacttgcggatctcacgaagtgcaa |
12531378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 12547011 - 12547241
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12547011 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
12547110 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
12547111 |
aacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcggtgctc |
12547210 |
T |
|
| Q |
201 |
ttctgatacttgcggatctcacgaagtgcaa |
231 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
12547211 |
ttctggtacttgcggatctcacgaagtgcaa |
12547241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 9866673 - 9866777
Alignment:
| Q |
5 |
aggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaaca |
104 |
Q |
| |
|
|||||| |||||||| |||||||||||||| ||||| || |||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
9866673 |
aggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaacaagatagtctttagcagcttcttgaagagcagaaaca |
9866772 |
T |
|
| Q |
105 |
gcact |
109 |
Q |
| |
|
|||| |
|
|
| T |
9866773 |
tcact |
9866777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 9894748 - 9894571
Alignment:
| Q |
12 |
atagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgc |
111 |
Q |
| |
|
|||||||| | |||||||||||| || || | ||||||||| |||||||||| ||||| | |||||||| || ||||||||| ||||||||||||||| | |
|
|
| T |
9894748 |
atagtaactcacttagcatgaatagcgcaaatattagtatcttcaaacaaactaacaaaacaagcttcaacaacttcttgaacagcagaaacagcactac |
9894649 |
T |
|
| Q |
112 |
tttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaag |
190 |
Q |
| |
|
| ||||| | ||| | || ||| |||||||||| ||||| | ||||||||||| || |||||||||||||| ||||| |
|
|
| T |
9894648 |
tctggaacctcagaccagtcttg-aatcctgagcaatttccctcacaagtctctgaaacggaagcttccttattagaag |
9894571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 9870097 - 9869994
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| || || |||||| |||| | |||||||||||||| |||||||||| |||||||||||||| || | |
|
|
| T |
9870097 |
ccttaggcataatagtaactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagcttcaacagcttcttgaagaccata |
9869998 |
T |
|
| Q |
101 |
aaca |
104 |
Q |
| |
|
|||| |
|
|
| T |
9869997 |
aaca |
9869994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 38735619 - 38735501
Alignment:
| Q |
15 |
gtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgcttt |
114 |
Q |
| |
|
|||||||||||||||||||| | ||| || |||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||| |||| | |
|
|
| T |
38735619 |
gtaaccctcttagcatgaatagtacaaaggttagtatcttcaaacaaaccaacaagataaacttcaatgactttttgaagagcagaaacagcgttgctat |
38735520 |
T |
|
| Q |
115 |
ggaatcgaagatctgtttt |
133 |
Q |
| |
|
|||| | ||||||||||| |
|
|
| T |
38735519 |
ggaacctgagatctgtttt |
38735501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 9869976 - 9869901
Alignment:
| Q |
156 |
acaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaa |
231 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||| || |||||||| ||||| |||||||||||||| |||| |
|
|
| T |
9869976 |
acaagtctctaaaacggaagcttccttattagaagctcagtgctcttctggtacttacggatctcacgaagagcaa |
9869901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 12538712 - 12538673
Alignment:
| Q |
3 |
ttaggcatgatagtaaccctcttagcatgaatggcacaga |
42 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
12538712 |
ttaggcatgatagtaactctcttagcatgaatagcacaga |
12538673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 13576464 - 13576239
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13576464 |
ccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
13576365 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
||||||||||||||| || || ||||| ||||||||||||||||| ||||| ||||| | ||| |||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
13576364 |
aacagcactgctttgaaaacggagatccgttttgaaatcctgagcaatttctcgaaccaatctttggaatggaagcttccttatgagaagctcggtgctc |
13576265 |
T |
|
| Q |
201 |
ttctgatacttgcggatctcacgaag |
226 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
13576264 |
ttctgatacttgcggatttcacgaag |
13576239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 34571458 - 34571688
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||||| ||||| || |
|
|
| T |
34571458 |
ccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgag |
34571557 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
||| ||| ||| |||||||| | ||| || |||||||||||||| |||||||||||||| | |||||||||||| || | |||| ||| ||||||||| |
|
|
| T |
34571558 |
aaccgcatggctctggaatcgtaaatccgtcttgaaatcctgagcaatttcacgaacaagacgctggaatggaagtttacggatcaaaagttcggtactc |
34571657 |
T |
|
| Q |
201 |
ttctgatacttgcggatctcacgaagtgcaa |
231 |
Q |
| |
|
||||||||||| || ||||||||||| |||| |
|
|
| T |
34571658 |
ttctgatacttacgtatctcacgaagagcaa |
34571688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 34578945 - 34579156
Alignment:
| Q |
20 |
cctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaat |
119 |
Q |
| |
|
||||||||||||||| ||||| | ||| |||||||||||||||||||| | ||||||||| | ||||| ||||| || ||| ||| ||| |||||| |
|
|
| T |
34578945 |
cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaat |
34579044 |
T |
|
| Q |
120 |
cgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatct |
219 |
Q |
| |
|
| | |||||| ||||||| |||||| |||||||||||||| | |||||||||||| || | |||| ||| ||||||| |||||||||||| || |||| |
|
|
| T |
34579045 |
ctcaaatctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatct |
34579144 |
T |
|
| Q |
220 |
cacgaagtgcaa |
231 |
Q |
| |
|
||||||| |||| |
|
|
| T |
34579145 |
cacgaagagcaa |
34579156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 34584694 - 34584905
Alignment:
| Q |
20 |
cctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaat |
119 |
Q |
| |
|
||||||||||||||| ||||| | ||| |||||||||||||||||||| | ||||||||| | ||||| ||||| || ||| ||| ||| |||||| |
|
|
| T |
34584694 |
cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaat |
34584793 |
T |
|
| Q |
120 |
cgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatct |
219 |
Q |
| |
|
| | |||||| ||||||| |||||| |||||||||||||| | |||||||||||| || | |||| ||| ||||||| |||||||||||| || |||| |
|
|
| T |
34584794 |
ctcaaatctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatct |
34584893 |
T |
|
| Q |
220 |
cacgaagtgcaa |
231 |
Q |
| |
|
||||||| |||| |
|
|
| T |
34584894 |
cacgaagagcaa |
34584905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 34562664 - 34562757
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaag |
94 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||||| ||||| |
|
|
| T |
34562664 |
ccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcctgaag |
34562757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 34562807 - 34562897
Alignment:
| Q |
141 |
tgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaa |
231 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||||| | |||| ||| |||| ||||||||| || || || ||||| ||||| |||| |
|
|
| T |
34562807 |
tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaa |
34562897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 3929973 - 3930201
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3929973 |
ccttcggcataatagtaactctcttagcatgaatggcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcagcttcttgaagagcaga |
3930072 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
||||||||| || || ||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||| ||||| || ||||| || || ||| |
|
|
| T |
3930073 |
aacagcactactctgaaatcgaagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagttcagtgctc |
3930172 |
T |
|
| Q |
201 |
ttctgatacttgcggatctcacgaagtgc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3930173 |
ttctgatacttgcggatctcacgaagtgc |
3930201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 21317690 - 21317465
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| || || ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21317690 |
ccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagccgcttcttgaagagcaga |
21317591 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| | ||||||||||| || |||||||||||||| || ||| |
|
|
| T |
21317590 |
aacagcactgctctggaatctgagatcggttttgaaatcctgagcgatttcacgaacaagacgttggaatggaagttttcttatcagaagctcagtgctc |
21317491 |
T |
|
| Q |
201 |
ttctgatacttgcggatctcacgaag |
226 |
Q |
| |
|
||||| ||||||||||| |||||||| |
|
|
| T |
21317490 |
ttctggtacttgcggatttcacgaag |
21317465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 3928621 - 3928831
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| ||||| ||||| |||| |||||||||||||||| | | |||||||| ||||||||||||||| |
|
|
| T |
3928621 |
ccttaggcacaatagtaactctcttagcatgaatagcacaaagattcatatcttcaaacaaaccaacaatacacgcttcagcgatttcttgaagagcaga |
3928720 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
|||||| ||| | |||||||| ||||| |||||||||||||||||||||||| |||| | ||| | ||| ||||| ||||| || |||||||| || || |
|
|
| T |
3928721 |
aacagcgctgatctggaatcggagatcagttttgaaatcctgagcgatttcatgaaccaatcttttgaaaggaagtttcctaatgagaagctcagtgatc |
3928820 |
T |
|
| Q |
201 |
ttctgatactt |
211 |
Q |
| |
|
|| |||||||| |
|
|
| T |
3928821 |
ttttgatactt |
3928831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 43479686 - 43479916
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| || || || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43479686 |
ccttaggcataattgtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaacaaaccaacaagataagcttcagcggcttcttgaagagcaga |
43479785 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
|||||| || || ||||| | ||||| ||||||||||||||||||||||| | ||| | ||| ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
43479786 |
aacagcgctactctggaacctgagatcagttttgaaatcctgagcgatttccctaaccaatctttggaatggaagcttcctgatgagaagctcggtactc |
43479885 |
T |
|
| Q |
201 |
ttctgatacttgcggatctcacgaagtgcaa |
231 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
43479886 |
ttctgatacttgcggatctcacgaagagcaa |
43479916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 25865816 - 25865586
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
|||| ||||| || || ||||||||||||||||| ||||| | |||||||||||||||||| || ||||||||||| ||||||||||| ||||| ||| |
|
|
| T |
25865816 |
cctttggcataatcgttaccctcttagcatgaattgcacacaaattagtatcctcaaacaatcccacaagataagcctcagcagcttcctgaagtgcaag |
25865717 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
||||||| || || |||| ||||| ||||||||||||||||| |||||||||||||| | ||||||||||||||| | |||| |||||| |||||| |
|
|
| T |
25865716 |
aacagcatgactctgaaatctcagatccgttttgaaatcctgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagctcagtactc |
25865617 |
T |
|
| Q |
201 |
ttctgatacttgcggatctcacgaagtgcaa |
231 |
Q |
| |
|
||||||||||| |||||||||||||| |||| |
|
|
| T |
25865616 |
ttctgatacttacggatctcacgaagagcaa |
25865586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26592284 - 26592056
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| || ||||| ||||||||||||||||| |||||||||||||| || || |||||||| || || || |
|
|
| T |
26592284 |
ccttaggcatgatagtaacacgcttagcatgaatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgcagcgccga |
26592185 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
|||||| ||| || || || ||||| || |||||||||||||| || ||||||||||| | |||||| ||||| || | || ||||| ||||| ||| |
|
|
| T |
26592184 |
cacagcagagctctgaaaacggagatccgtcttgaaatcctgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgctc |
26592085 |
T |
|
| Q |
201 |
ttctgatacttgcggatctcacgaagtgc |
229 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |
|
|
| T |
26592084 |
ttctggtacttgcggatctcacggagtgc |
26592056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 38799611 - 38799392
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| ||||| || || || || ||||| | |||||| | |||||||||||||||||||||||||| || |
|
|
| T |
38799611 |
ccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagcgga |
38799512 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
||| || ||||| ||||||| |||||||| |||||||| ||||| |||||||||||||| | ||||||||||| || | || |||||||| || ||| |
|
|
| T |
38799511 |
aactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagtttacggatgagaagctcagtgctc |
38799412 |
T |
|
| Q |
201 |
ttctgatacttgcggatctc |
220 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
38799411 |
ttctgatacttacggatctc |
38799392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38821906 - 38822125
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| ||||| || || || || ||||| | |||||| | |||||||||||||||||||||||||| || |
|
|
| T |
38821906 |
ccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagcgga |
38822005 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
||| || ||||| ||||||| |||||||| |||||||| ||||| |||||||||||||| | ||||||||||| || | || |||||||| || ||| |
|
|
| T |
38822006 |
aactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagtttacggatgagaagctcagtgctc |
38822105 |
T |
|
| Q |
201 |
ttctgatacttgcggatctc |
220 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
38822106 |
ttctgatacttacggatctc |
38822125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 41944060 - 41943830
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||| ||||| | ||| |||||||||||||| ||||| ||||||||||| || ||||| ||||| ||| |
|
|
| T |
41944060 |
cctttggcataattgtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaatccaaccagataagcttctgctgcttcctgaagtgcaag |
41943961 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
||||||| ||| ||||||| ||||| || |||||||| ||||| |||||||||||||| | |||||||||||||| | |||| ||| || |||||| |
|
|
| T |
41943960 |
aacagcatggctctggaatctgagatccgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagcttacggatcaaaagatcagtactc |
41943861 |
T |
|
| Q |
201 |
ttctgatacttgcggatctcacgaagtgcaa |
231 |
Q |
| |
|
||||| || || ||||||||||||||||||| |
|
|
| T |
41943860 |
ttctggtatttacggatctcacgaagtgcaa |
41943830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 44344071 - 44343978
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaag |
94 |
Q |
| |
|
|||| ||||| || || ||||||||||||||||| ||||| | ||| |||||||||||||| || || |||||||| ||||| ||||| ||||| |
|
|
| T |
44344071 |
ccttgggcataatcgtcaccctcttagcatgaatagcacacaaattggtatcctcaaacaatcccacgagataagcctcagctgcttcctgaag |
44343978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 38807112 - 38807046
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaac |
67 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || || |||| || |||||||| | |||||| |
|
|
| T |
38807112 |
ccttaggcatgatagtaactctcttagcatgaattgcgcacggatttgtgtcctcaaagagaccaac |
38807046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 31127 - 30903
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| || || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31127 |
ccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
31028 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
|||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| | |||||| |||| || |||||||||||||| || ||| |
|
|
| T |
31027 |
aacagcactgctctggaatctgagataggttttgaaatcctgagcgatttcacgaacaagacgttggaat-gaagttttcttatcagaagctcagtgctc |
30929 |
T |
|
| Q |
201 |
ttctgatacttgcggatctcacgaag |
226 |
Q |
| |
|
||||| ||||||||||| |||||||| |
|
|
| T |
30928 |
ttctggtacttgcggatttcacgaag |
30903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 24860662 - 24860432
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
|||| ||||| || ||||| |||||||||||||| || || ||||| ||||| ||||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24860662 |
ccttgggcataatggtaactctcttagcatgaatagcgcaaagatttgtatcttcaaagagtccaacgagataagcttcagcagcttcttgaagagcaga |
24860563 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
|||||| || || ||||| || ||||| ||||||||||| ||||||||||||||||| || | ||||||||||| || | || |||||||| || || |
|
|
| T |
24860562 |
aacagcgctactctggaaacggagatcggttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgctt |
24860463 |
T |
|
| Q |
201 |
ttctgatacttgcggatctcacgaagtgcaa |
231 |
Q |
| |
|
|| || ||||||||||| || |||||||||| |
|
|
| T |
24860462 |
ttttggtacttgcggatttcgcgaagtgcaa |
24860432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34748871 - 34748649
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcaga |
100 |
Q |
| |
|
|||||||||||||||| || | ||| ||||||||||||||||| |||||||||||||| | |||||| |||||||| ||||| |||||||| || || || |
|
|
| T |
34748871 |
ccttaggcatgatagtgacacgcttggcatgaatggcacagaggttagtatcctcaaagagaccaacgagataagcctcagccgcttcttgcagcgccga |
34748772 |
T |
|
| Q |
101 |
aacagcactgctttggaatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactc |
200 |
Q |
| |
|
|| || ||| ||||| || ||||| || ||||||||||||||||| |||||||| || | |||||| || || || | || || || ||||| ||| |
|
|
| T |
34748771 |
cacggcggagctctggaaacggagatcagtcttgaaatcctgagcgatctcacgaaccagacgctggaaggggagtttgcggatgaggagttcggtgctc |
34748672 |
T |
|
| Q |
201 |
ttctgatacttgcggatctcacg |
223 |
Q |
| |
|
||||| ||||| ||||||||||| |
|
|
| T |
34748671 |
ttctggtacttacggatctcacg |
34748649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 53290838 - 53290720
Alignment:
| Q |
15 |
gtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgcttt |
114 |
Q |
| |
|
|||| ||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||| | |||| | |
|
|
| T |
53290838 |
gtaatcctcttagcatgaatggtacaaaggttagtatcttcaaacaaaccaacaagataagcttcaacgactttttgaagagcagaaacaacgttgctat |
53290739 |
T |
|
| Q |
115 |
ggaatcgaagatctgtttt |
133 |
Q |
| |
|
|||| | ||||||||||| |
|
|
| T |
53290738 |
ggaacctgagatctgtttt |
53290720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 40035909 - 40035830
Alignment:
| Q |
132 |
ttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatactt |
211 |
Q |
| |
|
||||| |||||||| ||||||||||| | ||||||||||| |||||||| |||| ||||| ||||||||||||||||| |
|
|
| T |
40035909 |
ttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatactt |
40035830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 44771103 - 44771153
Alignment:
| Q |
123 |
agatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatgga |
173 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
44771103 |
agatcggttttgaaatcctgagcgatttcacgaacaagacgttggaatgga |
44771153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 40045234 - 40045155
Alignment:
| Q |
132 |
ttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatactt |
211 |
Q |
| |
|
||||| |||||||| ||||||||||| | |||||||| || |||||||| |||| ||||| ||||||||||| ||||| |
|
|
| T |
40045234 |
ttgaagtcctgagcaatttcacgaaccaacctctggaaggggagcttcctgatcaagagctcagtactcttctggtactt |
40045155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 40036152 - 40036062
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttg |
91 |
Q |
| |
|
|||| ||||| |||||||| | ||| ||||| || ||||| | ||||| |||||||| | |||||||||||| ||||||||||| ||||| |
|
|
| T |
40036152 |
ccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg |
40036062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 17769233 - 17769314
Alignment:
| Q |
60 |
aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcct |
141 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||| ||| || | ||||| ||||||||||||||||||| |
|
|
| T |
17769233 |
aaaccaacaagataagctacactggcttcttgaagagcagaaacagtactactctaaaatcggagatctgttttgaaatcct |
17769314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 7594402 - 7594492
Alignment:
| Q |
132 |
ttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcac |
222 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| | ||| ||||||||||| | |||| |||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
7594402 |
ttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac |
7594492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 7594143 - 7594236
Alignment:
| Q |
1 |
ccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaag |
94 |
Q |
| |
|
|||| ||||| || || ||||||||||||||||| ||||| ||||| || ||||||||||| ||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
7594143 |
cctttggcataattgtcaccctcttagcatgaattgcacacagattggtgtcctcaaacaatccaaccaggtaagcctcagctgcttcctgaag |
7594236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 1539185 - 1539263
Alignment:
| Q |
60 |
aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaat |
138 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| |||||||| ||| || | ||||| |||||||||||||||| |
|
|
| T |
1539185 |
aaaccaacaagataagctacactggcttcttgaagagaagaaacagtactactctaaaatcggagatctgttttgaaat |
1539263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 27440954 - 27440873
Alignment:
| Q |
60 |
aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcct |
141 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||| || || | ||||| ||||||||||||||||||| |
|
|
| T |
27440954 |
aaaccaacaagataagctacactggcttcttgaagagcagaaacaatgctactctaaaatcggagatctgttttgaaatcct |
27440873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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