View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8354_high_3 (Length: 471)
Name: NF8354_high_3
Description: NF8354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8354_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 23 - 458
Target Start/End: Complemental strand, 306544 - 306103
Alignment:
| Q |
23 |
ataaccaatacaatacatatctggaaggcatgctcctgttaagtttttcggtcacgagattgagcctccaatcaccgattg----taaagtaagtctcat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
306544 |
ataaccaatacaatacatatctggaaggcatgctcctgttaagtttttcggtcacgagattgagcctccaatcaccgattgattgtaaagtaagtctcat |
306445 |
T |
|
| Q |
119 |
catgttaaatgataagaccccataaacacactaccaaaaagtgtatnnnnnnnnn--gcttctgttgccatcttcacattttcccaaccaactagcatat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
306444 |
catgttaaatgataagaccccataaacacactaccaaaaagtgtataaaaaaaaaaagcttctgttgccatcttcacattttcccaaccaattagcatat |
306345 |
T |
|
| Q |
217 |
taaataaacttagaattatcacatgaatgccataaatatgtgaatcatacaactatatccaagataatataagaatgcagtccatatacggtcatttgtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
306344 |
taaataaacttagaattatcacatgaatgccataaatatgtgaatcatacaactatatccaagataatataagaatgcagtccatatacggtcatttgtg |
306245 |
T |
|
| Q |
317 |
tcagaatcgtttgagttcactaagatgaagcattttatttttacattcacgtgtatatggctgagcctaagtgctacaaaatgtttgtctcaggttttgc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
306244 |
tcagaatcgtttgagttcactaagatgaagcattttattttcacattcacgtgtatatggctgagcctaagtgctacaaaatgtttgtctcaggttttgc |
306145 |
T |
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| Q |
417 |
cacggcaaccggagggacaacaagtgccatgtttcttcatat |
458 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
306144 |
cacggcaaccggagggacaacaagtgccatgtttcttcatat |
306103 |
T |
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