View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8354_high_9 (Length: 241)

Name: NF8354_high_9
Description: NF8354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8354_high_9
NF8354_high_9
[»] scaffold0536 (3 HSPs)
scaffold0536 (1-141)||(6497-6637)
scaffold0536 (5-106)||(10514-10615)
scaffold0536 (188-225)||(6413-6450)
[»] chr4 (5 HSPs)
chr4 (1-141)||(48912331-48912471)
chr4 (2-141)||(48958198-48958337)
chr4 (5-141)||(48965386-48965519)
chr4 (11-141)||(48961356-48961486)
chr4 (191-227)||(48974349-48974385)
[»] chr6 (2 HSPs)
chr6 (7-107)||(12590192-12590292)
chr6 (188-226)||(12483365-12483403)
[»] chr2 (3 HSPs)
chr2 (11-141)||(13448426-13448553)
chr2 (11-141)||(13440263-13440390)
chr2 (11-141)||(13454897-13455024)
[»] chr8 (1 HSPs)
chr8 (15-141)||(12641467-12641593)
[»] chr5 (2 HSPs)
chr5 (16-99)||(12540753-12540836)
chr5 (52-137)||(28385438-28385520)
[»] chr7 (2 HSPs)
chr7 (189-227)||(3417430-3417468)
chr7 (49-141)||(3417516-3417605)


Alignment Details
Target: scaffold0536 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 6637 - 6497
Alignment:
Q  1 aacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6637 aacagtggaattccacccacaatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttc 6538  T
Q  101 ttctttccgatatttctctcttcgaatccctttggcaacca 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6537 ttctttccgatatttctctcttcgaatccctttggcaacca 6497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 10615 - 10514
Alignment:
Q  5 gtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttct 104  Q
    |||||||||||||||||||| |||||||||||||||||| |  ||||||| | ||||||||| || || ||||||||| |||||||||||||||||||||    
T  10615 gtggaattccacccacaatgtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttct 10516  T
Q  105 tt 106  Q
    ||    
T  10515 tt 10514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 6450 - 6413
Alignment:
Q  188 ggaacaacccatatgaatttgtgacccgatgcttctat 225  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6450 ggaacaacccatatgaatttgtgacccgatgcttctat 6413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 48912471 - 48912331
Alignment:
Q  1 aacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttc 100  Q
    |||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||| ||||||||| ||||||||||||||| ||||||||| | |||||    
T  48912471 aacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttc 48912372  T
Q  101 ttctttccgatatttctctcttcgaatccctttggcaacca 141  Q
    |||||||||||| |||||||||| || ||||||||||||||    
T  48912371 ttctttccgataattctctcttcaaacccctttggcaacca 48912331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 48958198 - 48958337
Alignment:
Q  2 acagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttct 101  Q
    |||||||| |||||||| ||||| |||||||| |||||||| ||  ||||||||| ||||| ||||||||| ||||| |||||||| |||||||| ||||    
T  48958198 acagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacctttct 48958297  T
Q  102 tctttccgatatttctctcttcgaatccctttggcaacca 141  Q
    ||||||| || ||||||||||||||||| || ||||||||    
T  48958298 tctttccaatgtttctctcttcgaatcctttcggcaacca 48958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 48965386 - 48965519
Alignment:
Q  5 gtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttct 104  Q
    ||||| ||||| |||||||| |||||||| |||||||||||   |||||||| ||||| ||| || ||||||||||||||||||||||||||   |||||    
T  48965386 gtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacc---cttct 48965482  T
Q  105 ttccgatatttctctcttcgaatccctttggcaacca 141  Q
    |||| || ||||||||||||||||||||||| |||||    
T  48965483 ttccaatgtttctctcttcgaatccctttggtaacca 48965519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 48961356 - 48961486
Alignment:
Q  11 ttccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccga 110  Q
    |||||||| ||||||||||||||| ||||||| ||| |||||| ||  |||||||||||||| ||||| ||| |||| |||||||||||||||||| | |    
T  48961356 ttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaa 48961455  T
Q  111 tatttctctcttcgaatccctttggcaacca 141  Q
    | ||||||||||| ||||| || ||||||||    
T  48961456 tgtttctctcttcaaatcctttcggcaacca 48961486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 48974349 - 48974385
Alignment:
Q  191 acaacccatatgaatttgtgacccgatgcttctattg 227  Q
    |||||||||||||||| ||||||||||||||||||||    
T  48974349 acaacccatatgaattggtgacccgatgcttctattg 48974385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 12590292 - 12590192
Alignment:
Q  7 ggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttcttt 106  Q
    ||||||||| |||||||| ||||||||||| ||||| || |||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  12590292 ggaattccatccacaatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaacccttcttcttt 12590193  T
Q  107 c 107  Q
    |    
T  12590192 c 12590192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 12483403 - 12483365
Alignment:
Q  188 ggaacaacccatatgaatttgtgacccgatgcttctatt 226  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  12483403 ggaacaacccatatgaattttttacccgatgcttctatt 12483365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 13448426 - 13448553
Alignment:
Q  11 ttccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccga 110  Q
    |||| ||| ||||||||||||||  | ||||| ||   ||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||   ||||    
T  13448426 ttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttc---ccga 13448522  T
Q  111 tatttctctcttcgaatccctttggcaacca 141  Q
    ||||||||||||| |||||||| || |||||    
T  13448523 tatttctctcttcaaatcccttcggtaacca 13448553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 13440263 - 13440390
Alignment:
Q  11 ttccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccga 110  Q
    |||| ||| ||||||||||||||  | ||||| ||   ||||||||| ||| |||||||||| ||||||||| |||| ||||||||| || || |    |    
T  13440263 ttccccccgcaatgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctccta---a 13440359  T
Q  111 tatttctctcttcgaatccctttggcaacca 141  Q
    | |||||||||||||||||||||||||||||    
T  13440360 tgtttctctcttcgaatccctttggcaacca 13440390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 13454897 - 13455024
Alignment:
Q  11 ttccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccga 110  Q
    |||| ||| ||||||||||||||  | ||||| ||   ||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||   |||    
T  13454897 ttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttct---cga 13454993  T
Q  111 tatttctctcttcgaatccctttggcaacca 141  Q
    | ||| ||||||| |||||||| ||||||||    
T  13454994 tgtttttctcttcaaatcccttcggcaacca 13455024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 12641593 - 12641467
Alignment:
Q  15 acccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatt 114  Q
    |||| ||||||||||| || |||||||||||   |||||| |||||||| |||||||| |||||  ||||||| || ||||| ||||| ||| | | |||    
T  12641593 acccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttcttattttcaacatt 12641494  T
Q  115 tctctcttcgaatccctttggcaacca 141  Q
    ||||||||||||||| || ||||||||    
T  12641493 tctctcttcgaatcctttaggcaacca 12641467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 12540753 - 12540836
Alignment:
Q  16 cccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaaccctt 99  Q
    ||||||||| ||||||||  | ||||| ||   ||||||||| ||| |||| ||||| |||||||||||||| |||||||||||    
T  12540753 cccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaaccctt 12540836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 28385438 - 28385520
Alignment:
Q  52 gctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggca 137  Q
    |||||| |||| ||||||||| ||||||||||| || || |||||   ||||||||| || |||||||| || |||||||||||||    
T  28385438 gctcaatatcagaacttgtggggcccaacccctgattatgaaacc---cttctttccaatgtttctctcctcaaatccctttggca 28385520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 3417468 - 3417430
Alignment:
Q  189 gaacaacccatatgaatttgtgacccgatgcttctattg 227  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  3417468 gaacaacccatatgaatgggtgacccgatgcttctattg 3417430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 3417605 - 3417516
Alignment:
Q  49 gtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 141  Q
    ||||||||| |||  ||| ||||| |||||||||||||  ||||||||||   ||||||| || |||||||| || |||||||| ||||||||    
T  3417605 gtggctcaatatctgaacctgtggggcccaacccctaacgatcaaaccct---tctttccaatgtttctctcctcaaatcccttcggcaacca 3417516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University