View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8354_low_11 (Length: 239)
Name: NF8354_low_11
Description: NF8354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8354_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 39204722 - 39204499
Alignment:
| Q |
1 |
aatggttgaatatttgttaccttttttgtccttttcaattattctactttgattcctcagccaagttatataaacatcaactcattcatgtctttgttat |
100 |
Q |
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| T |
39204722 |
aatggttgaatatttgttaccttttttgtccttttcaattattctactttgattcctcagccaagttatataaacatcaactcattcatgtctttgttat |
39204623 |
T |
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| Q |
101 |
ggaattgcagctagaaacttggacagctttggtagcaattttgtgtttactttattttattctgaaggagattgttatgggagggaatagttcaaaaggg |
200 |
Q |
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| T |
39204622 |
ggaattgcagctagaaacttggacagctttggtagcaattttgtgtttactttattttattctgaaggagattgttatgggagggaatagttcaaaaggg |
39204523 |
T |
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| Q |
201 |
tctcctaggagaaggcatgttcct |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
39204522 |
tctcctaggagaaggcatgttcct |
39204499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 45289652 - 45289476
Alignment:
| Q |
42 |
ttctactttgattcctcagccaagttatataaacatcaactcattcatgtctttgttatggaattgcagctagaaacttggacagctttggtagcaattt |
141 |
Q |
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|||| ||||||||||||||||||||||||||||| | | ||||||| |||||| | |||||||| || ||||||||||| ||||||| || ||| |
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| T |
45289652 |
ttcttctttgattcctcagccaagttatataaaccttac----ttcatgtatttgtttttaaattgcagatacaaacttggacaactttggtttcagttt |
45289557 |
T |
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| Q |
142 |
tgtgtttactttattttattctgaaggagattgttatgggagggaatagttcaaaagggtctcctaggagaaggcatgttcct |
224 |
Q |
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| T |
45289556 |
tgtgtttaattttctttattgtgaatga--tttttgttggaggaaatagttcgaaaggatctcctaggaggaggcatgttcct |
45289476 |
T |
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