View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8354_low_14 (Length: 228)

Name: NF8354_low_14
Description: NF8354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8354_low_14
NF8354_low_14
[»] chr4 (5 HSPs)
chr4 (1-215)||(48961261-48961477)
chr4 (1-215)||(48958114-48958328)
chr4 (7-209)||(48912346-48912548)
chr4 (104-210)||(48974093-48974199)
chr4 (4-197)||(48965317-48965507)
[»] scaffold0536 (2 HSPs)
scaffold0536 (4-209)||(6509-6714)
scaffold0536 (1-209)||(10488-10696)
[»] chr8 (1 HSPs)
chr8 (1-211)||(12641476-12641686)
[»] chr2 (3 HSPs)
chr2 (30-209)||(13448339-13448518)
chr2 (4-200)||(13440185-13440378)
chr2 (4-200)||(13454819-13455012)
[»] chr6 (1 HSPs)
chr6 (4-215)||(12590167-12590381)
[»] chr7 (1 HSPs)
chr7 (4-170)||(3417528-3417691)
[»] chr5 (1 HSPs)
chr5 (4-170)||(12540700-12540863)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 48961477 - 48961261
Alignment:
Q  1 aaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48961477 aaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgt 48961378  T
Q  101 ttatgacgcattgcgggtggaa--ctccaccattgaggctgttagtgcagggatcccaatgataacgtggcccgtacatgaagaagaattctacaacgag 198  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  48961377 ttatgacgcattgcgggtggaactctccaccattgaggctggtagtgcagggatcccaatgataacatggcccgtacatggagaacaattctacaacgag 48961278  T
Q  199 aagttgataactgatgt 215  Q
    |||||||||||||||||    
T  48961277 aagttgataactgatgt 48961261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 48958328 - 48958114
Alignment:
Q  1 aaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgt 100  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| |||| ||| ||||||  || |||||||  |    
T  48958328 aaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccgtgggtgcat 48958229  T
Q  101 ttatgacgcattgcgggtggaactccaccattgaggctgttagtgcagggatcccaatgataacgtggcccgtacatgaagaagaattctacaacgagaa 200  Q
    ||||||| ||||||||||||||||||||  | ||||||||||| || ||| | |||||||| |||||||| || |||| |||| |||||||||| |||||    
T  48958228 ttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattctacaatgagaa 48958129  T
Q  201 gttgataactgatgt 215  Q
    |||||||||| ||||    
T  48958128 gttgataactaatgt 48958114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 48912346 - 48912548
Alignment:
Q  7 tttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatga 106  Q
    |||||||||||||  || | ||||||||||| | |||| |||||||| ||||| ||||| |||||||| ||| |||||||||| |||||||  |||||||    
T  48912346 tttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatga 48912445  T
Q  107 cgcattgcgggtggaactccaccattgaggctgttagtgcagggatcccaatgataacgtggcccgtacatgaagaagaattctacaacgagaagttgat 206  Q
    | ||||| |||||||| |||||  ||||||| |||||||||||| | |||||||| ||||||||  | |||| |||| | || ||||| |||||||||||    
T  48912446 cacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacagttttacaatgagaagttgat 48912545  T
Q  207 aac 209  Q
    |||    
T  48912546 aac 48912548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 48974199 - 48974093
Alignment:
Q  104 tgacgcattgcgggtggaactccaccattgaggctgttagtgcagggatcccaatgataacgtggcccgtacatgaagaagaattctacaacgagaagtt 203  Q
    |||| ||||||||||||||||||||| | || || |||||||||||| | |||||||| |||||||| || ||||| ||| |||||||||||||||||||    
T  48974199 tgacacattgcgggtggaactccaccgtggaagccgttagtgcaggggttccaatgatcacgtggccagtgcatgacgaacaattctacaacgagaagtt 48974100  T
Q  204 gataact 210  Q
    |||||||    
T  48974099 gataact 48974093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 48965507 - 48965317
Alignment:
Q  4 ggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgttta 103  Q
    ||||| |||||||||||||||| |||||||   |||||||| |||| ||| ||||| || || ||| |||| ||| ||||| | || |||||||  ||||    
T  48965507 ggattcgaagagagaaacattggaaagaag---ggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgccttta 48965411  T
Q  104 tgacgcattgcgggtggaactccaccattgaggctgttagtgcagggatcccaatgataacgtggcccgtacatgaagaagaattctacaacga 197  Q
    |||| ||||| || |||||||||||  | ||||||||| |||| ||| | || ||||| || |||||   ||||| |||| |||||||||||||    
T  48965410 tgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacga 48965317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 209
Target Start/End: Original strand, 6509 - 6714
Alignment:
Q  4 ggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgttta 103  Q
    ||||| ||||||||||| || | |||||||||||||||||| |||| ||| ||||| ||||||||||||||  || |||||| |||  |||||| |||||    
T  6509 ggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctctgggtgcgttta 6608  T
Q  104 tgacgcattgcgggtggaactccaccattgaggctgttagtgcagggatcccaatgataacgtggcccgtacatgaagaagaattctacaacgagaagtt 203  Q
    |||||||||| |||||||| |||||  |||||||||||||||||||| | || ||||| |||||||| || |||| |||| |||| ||||| || |||||    
T  6609 tgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcatggagaacaattttacaatgaaaagtt 6708  T
Q  204 gataac 209  Q
    ||||||    
T  6709 gataac 6714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 10488 - 10696
Alignment:
Q  1 aaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgt 100  Q
    |||||||||||||| |||   |||| |||||||||||||||||| |||||||| |||||||| || |||||||| ||  ||||||| |  ||||||| ||    
T  10488 aaaggatttgaagaaagagttattgcaaagaagaagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgt 10587  T
Q  101 ttatgacgcattgcgggtggaactccaccattgaggctgttagtgcagggatcccaatgataacgtggcccgtacatgaagaagaattctacaacgagaa 200  Q
    ||||||| ||||| |||||||| |||||| | ||||| |||||||||||| | |||||||| ||||||||  | |||| |||| |||| ||||| |||||    
T  10588 ttatgacacattgtgggtggaattccaccgtggaggcggttagtgcaggggttccaatgatcacgtggccaatgcatggagaacaattttacaatgagaa 10687  T
Q  201 gttgataac 209  Q
    |||||||||    
T  10688 gttgataac 10696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 12641476 - 12641686
Alignment:
Q  1 aaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgt 100  Q
    |||||||| |||||||||||  ||||||| ||||| ||||| ||||||| || ||||||||||||||| |||||  |  ||||| | || |||||||  |    
T  12641476 aaaggattcgaagagagaaatgttgaaaataagaaaggttttatcattagggagtgggccccacaagtaatgattttaagccacgctgctgtgggtgcat 12641575  T
Q  101 ttatgacgcattgcgggtggaactccaccattgaggctgttagtgcagggatcccaatgataacgtggcccgtacatgaagaagaattctacaacgagaa 200  Q
    | |||||||||||||||| |||||||    | |||||||||||||||||||| |||||||| |||||||| || || | |||| | ||||| || |||||    
T  12641576 tcatgacgcattgcgggtcgaactccttggtagaggctgttagtgcagggattccaatgatcacgtggccagtgcaaggagaacagttctataatgagaa 12641675  T
Q  201 gttgataactg 211  Q
    | |||||||||    
T  12641676 gctgataactg 12641686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 209
Target Start/End: Complemental strand, 13448518 - 13448339
Alignment:
Q  30 gaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgcattgcgggtggaactccacc 129  Q
    |||||||||||||||||||| ||| ||||||||||| |||| |||  || ||||| | || ||||| |  |||||||||||||||||| ||||||| |||    
T  13448518 gaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaacc 13448419  T
Q  130 attgaggctgttagtgcagggatcccaatgataacgtggcccgtacatgaagaagaattctacaacgagaagttgataac 209  Q
     | |||||||||||||| ||  | ||||||||||||||||| || |||| |||  |||||||||| |||||  |||||||    
T  13448418 gtagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaatgagaaactgataac 13448339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 200
Target Start/End: Complemental strand, 13440378 - 13440185
Alignment:
Q  4 ggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgttta 103  Q
    ||||| |||||||||||||||   | || || |||||||||||||||||| |||||||||||||||| |||  || ||||| | |||||||| |  ||||    
T  13440378 ggattcgaagagagaaacatt---aggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtggggggattta 13440282  T
Q  104 tgacgcattgcgggtggaactccaccattgaggctgttagtgcagggatcccaatgataacgtggcccgtacatgaagaagaattctacaacgagaa 200  Q
    |||||||||||||| ||||||| |   | ||| |||||||||| ||  | ||||||||||||||||| || |||| |||  ||||||||||||||||    
T  13440281 tgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaacgagaa 13440185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 200
Target Start/End: Complemental strand, 13455012 - 13454819
Alignment:
Q  4 ggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgttta 103  Q
    ||||||||||||| |||||| ||   ||| |||||||||||||||| ||| |||||||||||||||| |||  || | ||| | || ||||| |  ||||    
T  13455012 ggatttgaagagaaaaacatcga---gaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtggggggattta 13454916  T
Q  104 tgacgcattgcgggtggaactccaccattgaggctgttagtgcagggatcccaatgataacgtggcccgtacatgaagaagaattctacaacgagaa 200  Q
    |||||||||||||| ||||||| | | | |||||||||||    ||  | ||||||||||||||||| || |||| |||  ||||||||||||||||    
T  13454915 tgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttccaatgataacgtggccagtccatggagatcaattctacaacgagaa 13454819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 12590167 - 12590381
Alignment:
Q  4 ggatttgaagagagaaacattga---aaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgt 100  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||| ||| |||||||||||||| |||||  || ||||||  || ||||| | ||    
T  12590167 ggatttgaagagagaaacattgggagaaagaagaagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgt 12590266  T
Q  101 ttatgacgcattgcgggtggaactccaccattgaggctgttagtgcagggatcccaatgataacgtggcccgtacatgaagaagaattctacaacgagaa 200  Q
    ||||||| ||||| || ||||| |||  | | ||||| |||||||| || || || ||||| || |||||  |  |||  ||| | || ||||| |||||    
T  12590267 ttatgacacattgtggatggaattccgtcgtggaggcggttagtgctggaattccgatgatcacatggccattgaatggtgaacatttttacaatgagaa 12590366  T
Q  201 gttgataactgatgt 215  Q
    |||||||||||||||    
T  12590367 gttgataactgatgt 12590381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 3417528 - 3417691
Alignment:
Q  4 ggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgttta 103  Q
    |||||||| ||||||||||||| |||||||   ||||||||| ||| ||| ||||||||||| |||  |||  || ||||| | ||||| || |  ||||    
T  3417528 ggatttgaggagagaaacattggaaagaag---ggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtagggggattta 3417624  T
Q  104 tgacgcattgcgggtggaactccaccattgaggctgttagtgcagggatcccaatgataacgtggcc 170  Q
    |||| ||||| ||| |||||||     ||||||||||| |||||||  | |||||||||||||||||    
T  3417625 tgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataacgtggcc 3417691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 12540863 - 12540700
Alignment:
Q  4 ggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgttta 103  Q
    |||||||| ||||||||||||| ||| |||   ||||||||||||| ||| ||||||||||| |||| |||  || ||||| | |||||||| |  ||||    
T  12540863 ggatttgaggagagaaacattggaaaaaag---ggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggattta 12540767  T
Q  104 tgacgcattgcgggtggaactccaccattgaggctgttagtgcagggatcccaatgataacgtggcc 170  Q
    |||| ||||| ||| | ||||| |   | ||||||||| |||| ||  | |||||||||||||||||    
T  12540766 tgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggcc 12540700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University