View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8354_low_2 (Length: 531)
Name: NF8354_low_2
Description: NF8354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8354_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 16 - 516
Target Start/End: Complemental strand, 45974723 - 45974218
Alignment:
| Q |
16 |
atgaaccaaatgatgccaacttttttatggagatcggcattannnnnnnnattaagttaggaaggaatagaaattttattttctgattaaaattatcaac |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974723 |
atgaaccaaatgatgccaacttttttatggagatcggcattattttttttattaagttaggaaggaatagaaattttattttctgattaaaattatcaac |
45974624 |
T |
|
| Q |
116 |
aaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactgtgacaaccgattagaacttcga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45974623 |
aaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactgtgacaacctattagaacttcga |
45974524 |
T |
|
| Q |
216 |
atgaagatgggaaaggttgataccaacatga-----ttgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctat |
310 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974523 |
atgaagatgggaaaggttgataccaacatgacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctat |
45974424 |
T |
|
| Q |
311 |
atatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctgtgttgaacatttctggtt |
410 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974423 |
atatgctgccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctgtgttgaacatttctggtt |
45974324 |
T |
|
| Q |
411 |
gcaggcctctctaatacaaaatttgaagagatttcttccctaaaggtgaatatgtaaagggaaagtcataaagaaaacaataacacatgttaaggaattg |
510 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974323 |
gcaggcctctctaatacaaaatttgaagagatttcttcaccaaaggtgaatatgtaaagggaaagtcataaagaaaacaataacacatgttaaggaattg |
45974224 |
T |
|
| Q |
511 |
ttgttt |
516 |
Q |
| |
|
|||||| |
|
|
| T |
45974223 |
ttgttt |
45974218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 94 - 439
Target Start/End: Original strand, 45857200 - 45857546
Alignment:
| Q |
94 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
193 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
45857200 |
ttttctgattgaaattattaacaaattattagctaatattatatgttgaactttaagtcagtagatttttacatttatgattgtgttcctgtagagatca |
45857299 |
T |
|
| Q |
194 |
tgacaaccgatt-agaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
292 |
Q |
| |
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||| ||| | | ||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
45857300 |
tgataactgcctcagaacttcgaatgaagatgggaaagcttaacaccaacatgattgaagagacaggaaaagtgaaagcaaaaaggattgacaacaataa |
45857399 |
T |
|
| Q |
293 |
aatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctg |
392 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |
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|
| T |
45857400 |
aatggacatttctgctatatatgctgccaaaggtaaccaaaatatcattcattgttctgcaacatgaattaattttcacaggctgaactctatagttctg |
45857499 |
T |
|
| Q |
393 |
tgttgaacatttctggttgcaggcctctctaatacaaaatttgaaga |
439 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| ||||| ||||| |
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|
| T |
45857500 |
atttgaacatttctggatgcaggcctatctaatacgaaattcgaaga |
45857546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 94 - 439
Target Start/End: Original strand, 45869754 - 45870099
Alignment:
| Q |
94 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
193 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||| |
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|
| T |
45869754 |
ttttctgattgaaattattaacaaattattagctaatattatatgttgaactttaagtcagtagatttttacaattatgattgtgttcct-tagagatca |
45869852 |
T |
|
| Q |
194 |
tgacaaccgatt-agaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
292 |
Q |
| |
|
|||| |||| | ||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
45869853 |
tgactaccgcctcagaacttcgaatgaagatgggaaagcttaacaccaacatgattgaagagacaggaaaagtgaaagcaaaaaggattgacaacaataa |
45869952 |
T |
|
| Q |
293 |
aatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctg |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| | |||||||| |
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|
| T |
45869953 |
aatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattcttctgcaacatgaattaattttcacaggctgaactccatagttctg |
45870052 |
T |
|
| Q |
393 |
tgttgaacatttctggttgcaggcctctctaatacaaaatttgaaga |
439 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||| ||||| ||||| |
|
|
| T |
45870053 |
atttgaacttttctggatgcaggcctatctaatacgaaattcgaaga |
45870099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 241 - 431
Target Start/End: Complemental strand, 45965089 - 45964899
Alignment:
| Q |
241 |
acatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcat |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45965089 |
acatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataaaatggacatttctgctatatatgcttccaaaggtaaccaaaatatcat |
45964990 |
T |
|
| Q |
341 |
tcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctgtgttgaacatttctggttgcaggcctctctaatacaaaa |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
45964989 |
tcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctgtgttgaacatttctggttgcaggccactctaatacaaaa |
45964899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 94 - 439
Target Start/End: Complemental strand, 45981083 - 45980747
Alignment:
| Q |
94 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
193 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||| | |
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|
| T |
45981083 |
ttttctgattgaaattattaacaaactattagctaatattatatgttgaactttaagtcagtagatttttacatttatggttgtgttcctgcagagatta |
45980984 |
T |
|
| Q |
194 |
tgacaaccgatt-agaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
292 |
Q |
| |
|
||||||||| | |||||||| | | ||||| |||||| | ||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
45980983 |
tgacaaccgcctcagaacttcaactcaagataggaaagctaaccaccaacaagattgaagggaccggaaaaatgaaagcaaaaaggattgacaacaataa |
45980884 |
T |
|
| Q |
293 |
aatggacatttctgctatatatgcttccaaaggtaaccaaaatatcattcattgttctgaaacatgaattaattttcacaggttgaacttcttagttctg |
392 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||| |
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|
| T |
45980883 |
aatggacatttctgctatatatgcttctaaaggtaaccaaaatattattcattgttct---acatgaattaattttcacagg-------tcatagttctg |
45980794 |
T |
|
| Q |
393 |
tgttgaacatttctggttgcaggcctctctaatacaaaatttgaaga |
439 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45980793 |
aattgaacatttctgcttgcaggcctctctaatacaaaatttgaaga |
45980747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 45970131 - 45969985
Alignment:
| Q |
91 |
ttattttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagaga |
190 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
45970131 |
ttattttctgattaaaattaacaaaaaattattagctaacgttatatgttaaactttaagtcagtagatttttacatttatgattgtgttcctgtagaga |
45970032 |
T |
|
| Q |
191 |
ctgtgacaa-ccgattagaacttcgaatgaagatgggaaaggttgat |
236 |
Q |
| |
|
| |||||| || | |||||||||||||||||||||||||||||| |
|
|
| T |
45970031 |
ttatgacaaccccctcggaacttcgaatgaagatgggaaaggttgat |
45969985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 516
Target Start/End: Complemental strand, 45980424 - 45980339
Alignment:
| Q |
432 |
tttgaagagatttcttccctaaaggtgaatatgtaaagggaaagt-cataaagaaaacaataacacatgttaaggaattgttgttt |
516 |
Q |
| |
|
||||| ||||||||| ||| ||||||||||||||||||||||||| | ||| |||||| || ||||||||||||||| ||||||| |
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|
| T |
45980424 |
tttgatgagatttctgcccaaaaggtgaatatgtaaagggaaagtaaaaaaaaaaaacattatcacatgttaaggaatagttgttt |
45980339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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