View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8354_low_4 (Length: 408)

Name: NF8354_low_4
Description: NF8354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8354_low_4
NF8354_low_4
[»] chr3 (6 HSPs)
chr3 (32-395)||(2257167-2257534)
chr3 (45-158)||(52653524-52653636)
chr3 (51-154)||(50914667-50914769)
chr3 (45-92)||(23686025-23686072)
chr3 (45-92)||(24058262-24058309)
chr3 (63-142)||(33709591-33709670)
[»] chr5 (2 HSPs)
chr5 (45-158)||(36202866-36202978)
chr5 (52-158)||(11043029-11043134)
[»] chr8 (2 HSPs)
chr8 (45-158)||(12729141-12729253)
chr8 (73-158)||(28696338-28696422)
[»] chr4 (5 HSPs)
chr4 (45-157)||(20251147-20251258)
chr4 (45-139)||(122829-122922)
chr4 (51-160)||(48780114-48780221)
chr4 (61-158)||(24129597-24129693)
chr4 (74-158)||(1495028-1495110)
[»] chr7 (2 HSPs)
chr7 (51-158)||(12239877-12239982)
chr7 (87-158)||(24533198-24533269)
[»] chr6 (1 HSPs)
chr6 (51-158)||(28612400-28612504)
[»] chr2 (1 HSPs)
chr2 (45-158)||(34681354-34681466)
[»] chr1 (4 HSPs)
chr1 (45-121)||(49053555-49053630)
chr1 (45-121)||(49061135-49061210)
chr1 (45-127)||(42263734-42263817)
chr1 (68-142)||(12634262-12634334)
[»] scaffold0007 (1 HSPs)
scaffold0007 (51-135)||(215647-215730)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 32 - 395
Target Start/End: Complemental strand, 2257534 - 2257167
Alignment:
Q  32 tacaaatgtttagtgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgttt------g 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      |    
T  2257534 tacaaatgtttagtgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattt-agagaaaagatgtattgtttttgtttg 2257436  T
Q  126 acaattgaagcaatgtaggcattcatgaacaaattttggatataacataaaagaaataagcaattggttgaaaaatcaccaccctgtgttgccaaaatca 225  Q
    |||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2257435 acaattga-gcaatgtagtcactcatgaacaaattttggatattacataaaagaaataagcaattggttgaaaaatcaccaccctgtgttgccaaaatca 2257337  T
Q  226 caaggcttcaatgaaatagttagcgaacgagacgggtgtgatgctcaatcgatccttccatgctacagagaccgggaacataaactcgacatcaaataca 325  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |||| |||    
T  2257336 caaggcttcaatgaaataggtagcgaacgtgacgggtgtgatgctcaatcgatcattccatgccacagagaccgggaacataaacttgacaacaaacaca 2257237  T
Q  326 tcggatttgagaaaatttgattcttcgcacggttttcatccatattcacaactttcaactgttttcttct 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2257236 tcggatttgagaaaatttgattcttcgcacggttttcatccatatccacaactttcaactgttttcttct 2257167  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 158
Target Start/End: Original strand, 52653524 - 52653636
Alignment:
Q  45 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 144  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| | ||| |||||| |||||| ||||||||||||||||||| ||||||||      
T  52653524 tgtgagagaaatttccaaaatatatttggaaagttgcaatgattaaataaatacc-ttttagtgaaaaggtgtattgtttgacaattgatgcaatgtaac 52653622  T
Q  145 cattcatgaacaaa 158  Q
    ||||||||||||||    
T  52653623 cattcatgaacaaa 52653636  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 50914769 - 50914667
Alignment:
Q  51 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 150  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |||| || |||||||||||||||||| |  ||||||    
T  50914769 agaaattttcaaaatatatttgaaaagttgcaatggttaaatagagacc-ttttagagtaaaggtgtaatgcttgacaattgaagcaatgcaaccattca 50914671  T
Q  151 tgaa 154  Q
    ||||    
T  50914670 tgaa 50914667  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 23686025 - 23686072
Alignment:
Q  45 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaat 92  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||    
T  23686025 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaat 23686072  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 24058262 - 24058309
Alignment:
Q  45 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaat 92  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||    
T  24058262 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaat 24058309  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 33709591 - 33709670
Alignment:
Q  63 aatatatttgaaaagttgcaatgcttaaatagagaccattt-tagagaaaagatgtattgtttgacaattgaagcaatgta 142  Q
    |||||||||| |||||||||||| ||||| ||||||| ||| || | ||||| |||| || || |||||||||||||||||    
T  33709591 aatatatttggaaagttgcaatggttaaa-agagaccttttataaaaaaaaggtgtaatgctttacaattgaagcaatgta 33709670  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 158
Target Start/End: Original strand, 36202866 - 36202978
Alignment:
Q  45 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 144  Q
    ||||| ||||||||  ||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||| || |||||||||||| |||||||      
T  36202866 tgtgagagaaatttttaaaatatatttgaaaagttgcaatggttaaaaagagacc-ttttagagaaaaggtgtaatgcttgacaattgaatcaatgtaac 36202964  T
Q  145 cattcatgaacaaa 158  Q
    ||||||||||||||    
T  36202965 cattcatgaacaaa 36202978  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 11043134 - 11043029
Alignment:
Q  52 gaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcat 151  Q
    |||||||  ||||||||||||||||||| ||  | ||||||| ||| | ||||||||||||| |||| |||||| | ||| || |||| ||| |||||||    
T  11043134 gaaattttcaaaatatatttgaaaagtttcatcggttaaataaagatc-ttttagagaaaaggtgtaatgtttgtccatttaatcaatctagccattcat 11043036  T
Q  152 gaacaaa 158  Q
    |||||||    
T  11043035 gaacaaa 11043029  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 158
Target Start/End: Original strand, 12729141 - 12729253
Alignment:
Q  45 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 144  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||| || | ||||||||||||||| ||      
T  12729141 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaatagagacc-ttttagagaaaaggtgtaatgctcgacaattgaagcaatataac 12729239  T
Q  145 cattcatgaacaaa 158  Q
    ||||||||| ||||    
T  12729240 cattcatgagcaaa 12729253  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 28696422 - 28696338
Alignment:
Q  73 aaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 158  Q
    |||||||||||||  |||||||||| | ||||||||||||  |||| || || |||||||||||||||||  ||||||||||||||    
T  28696422 aaaagttgcaatgggtaaatagagatc-ttttagagaaaatgtgtaatgcttaacaattgaagcaatgtaaccattcatgaacaaa 28696338  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 20251147 - 20251258
Alignment:
Q  45 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 144  Q
    ||||| ||||||||  |||||||||||| |||||||||||  ||||||||||| | ||||||||||||  |||||||||||| ||||||| |||||||      
T  20251147 tgtgagagaaatttttaaaatatatttggaaagttgcaattgttaaatagagatc-ttttagagaaaaagtgtattgtttgataattgaaacaatgtaac 20251245  T
Q  145 cattcatgaacaa 157  Q
     ||||||||||||    
T  20251246 tattcatgaacaa 20251258  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 122829 - 122922
Alignment:
Q  45 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaat 139  Q
    ||||| ||||||||| ||| ||||||||||||||||||||  ||||||||| | ||||||||||||||  ||||||| |||||||||||| ||||    
T  122829 tgtgagagaaatttccaaagtatatttgaaaagttgcaatagttaaataga-aacattttagagaaaatgtgtattgcttgacaattgaaacaat 122922  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 48780221 - 48780114
Alignment:
Q  51 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 150  Q
    ||||||||  |||||||||||| |||||||||||| ||||| | ||| | ||||||||||||| | || |||||||||||||||||||| ||   |||||    
T  48780221 agaaattttcaaaatatatttggaaagttgcaatgattaaaca-agatc-ttttagagaaaaggtataatgtttgacaattgaagcaatataactattca 48780124  T
Q  151 tgaacaaatt 160  Q
    |||| |||||    
T  48780123 tgaataaatt 48780114  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 24129693 - 24129597
Alignment:
Q  61 aaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 158  Q
    |||||||||||  ||||| |||||| ||||||| || |  |||| ||| |||| ||||||| |||| |||||||||||||||  ||||||||||||||    
T  24129693 aaaatatatttagaaagtcgcaatggttaaatataggct-ttttggaggaaaggtgtattgcttgataattgaagcaatgtaaccattcatgaacaaa 24129597  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 1495110 - 1495028
Alignment:
Q  74 aaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 158  Q
    |||||||||||| ||||| ||||||||||| ||||||||| ||||  | || ||| |||||||||| ||  ||||||||||||||    
T  1495110 aaagttgcaatggttaaa-agagaccattt-agagaaaaggtgtaaagctttacagttgaagcaatataaccattcatgaacaaa 1495028  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 12239982 - 12239877
Alignment:
Q  51 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 150  Q
    ||||||||| ||||||||||||||| ||||||||| ||||| | ||||| |||||| |||||  ||||||| ||||||||||| ||||||||  ||||||    
T  12239982 agaaatttccaaaatatatttgaaa-gttgcaatggttaaagaaagacc-ttttagtgaaaaagtgtattgcttgacaattgatgcaatgtaaccattca 12239885  T
Q  151 tgaacaaa 158  Q
    ||||||||    
T  12239884 tgaacaaa 12239877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 158
Target Start/End: Original strand, 24533198 - 24533269
Alignment:
Q  87 ttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 158  Q
    |||||||||||   |||||||||||| ||||| ||||| ||||||| |||||||||  ||||||||||||||    
T  24533198 ttaaatagagatttttttagagaaaatatgtaatgtttaacaattgtagcaatgtaaccattcatgaacaaa 24533269  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 28612504 - 28612400
Alignment:
Q  51 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 150  Q
    ||||||||| ||||||||||| |||  ||| |||| |||||||||| || |||||||| |||| ||||||||||||||||||||||||| ||   |||||    
T  28612504 agaaatttccaaaatatatttaaaa--ttgtaatggttaaatagaggcc-ttttagagcaaaggtgtattgtttgacaattgaagcaatataacaattca 28612408  T
Q  151 tgaacaaa 158  Q
    ||||||||    
T  28612407 tgaacaaa 28612400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 34681466 - 34681354
Alignment:
Q  45 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 144  Q
    ||||| ||||||||  |||||||||||| || ||||||||| ||||| | | ||| ||||||||||||  |||| ||||||||||||||||||||||       
T  34681466 tgtgagagaaattttcaaaatatatttggaatgttgcaatggttaaacataaacc-ttttagagaaaaagtgtaatgtttgacaattgaagcaatgttac 34681368  T
Q  145 cattcatgaacaaa 158  Q
    |||| |||||||||    
T  34681367 cattgatgaacaaa 34681354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 49053555 - 49053630
Alignment:
Q  45 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattg 121  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| ||||| |||||| |||||| |||||||    
T  49053555 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagacc-ttttagtgaaaaggtgtattg 49053630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 49061135 - 49061210
Alignment:
Q  45 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattg 121  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| ||||| |||||| ||| || |||||||    
T  49061135 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagacc-ttttagtgaataggtgtattg 49061210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 42263817 - 42263734
Alignment:
Q  45 tgtgatagaaatttcaaaaatata--tttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgac 127  Q
    ||||| || |||||| ||||||||  ||||||||||||||||| || |||||||| ||||| || |||||||||||||| |||||    
T  42263817 tgtgaaaggaatttccaaaatataaatttgaaaagttgcaatgattgaatagaga-catttaagtgaaaagatgtattgcttgac 42263734  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 12634262 - 12634334
Alignment:
Q  68 atttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgta 142  Q
    ||||||||| |||||||| ||||||||||||  |||||  |||| ||| || |||||||| ||||||||||||||    
T  12634262 atttgaaaaattgcaatgattaaatagagac--ttttaatgaaaggatataatgtttgactattgaagcaatgta 12634334  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 215647 - 215730
Alignment:
Q  51 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaag 135  Q
    ||||||||| |||||||||||  |||||||||||| ||||||||||| | ||||  |||||| ||||| |||||||| |||||||    
T  215647 agaaatttccaaaatatatttagaaagttgcaatggttaaatagagatc-ttttgaagaaaatatgtaatgtttgacgattgaag 215730  T

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