View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8355_high_10 (Length: 284)
Name: NF8355_high_10
Description: NF8355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8355_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 49686823 - 49686568
Alignment:
| Q |
18 |
cattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattatttggtgggttgctggctaatttttgggtatg |
117 |
Q |
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| T |
49686823 |
cattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattatttggtgggttgctggctaatttttgggtatg |
49686724 |
T |
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| Q |
118 |
gctgcatttgaaagctgttatgttgtctttcatataaaaagttccaaaaggagagggaggagggagagtgatatcatagctaaaggcctcgcaagcattt |
217 |
Q |
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| T |
49686723 |
gctgcatttgaaagctgttatgttgtctttcatataaaaagttccaaaaggagagggaggagggagagtgatatcatagctaaaggcctcgcaagcattt |
49686624 |
T |
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| Q |
218 |
ttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtgttggaccgctc |
273 |
Q |
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| T |
49686623 |
ttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtgttgggccgctc |
49686568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 49691080 - 49690842
Alignment:
| Q |
30 |
ttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattatttggtgggttgctggctaatttttgggtatggctgcatttgaa |
129 |
Q |
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| T |
49691080 |
ttgaatcgccaaagtaaaaatcatagggatgacaagaactatttatgaagaaattacttggagggtgaatgcctaattttcgggtatggttgcatttgaa |
49690981 |
T |
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| Q |
130 |
agctgttatgttgtctttcatataaaaagttccaaaaggagagggaggagggagagtgatat---catagctaaaggcctcgcaagcatttttctgcaaa |
226 |
Q |
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| T |
49690980 |
agctgttatgtagtttttcataaaaaaagttccaaaaggagtgggaggagggagggtaatattaacatagctgaatgcctcacaagcatttttctccaaa |
49690881 |
T |
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| Q |
227 |
agcttggtgaaattcagatcaacaatggaaatagtgttg |
265 |
Q |
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| T |
49690880 |
agcttggtgatattggggtcaataatggaaatagtgttg |
49690842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 49679446 - 49679207
Alignment:
| Q |
30 |
ttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattatttggtgggttgctggctaatttttgggtatggctgcatttgaa |
129 |
Q |
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||||||| || ||||||||||||||| || |||| | ||||||| ||||||||||| |||| || | | || |||||||| ||||| || |||||||||| |
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| T |
49679446 |
ttgaatcgccaaagtaaaaatcatagggatgacaagaactatttctgaagaaattacttggaggttggatgcctaattttcgggtacggttgcatttgaa |
49679347 |
T |
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| Q |
130 |
agctgttatgttgtctttcat-ataaaaagttccaaaaggagagggaggagggagagtgatat---catagctaaaggcctcgcaagcatttttctgcaa |
225 |
Q |
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| T |
49679346 |
agctgttatgtagtttttcataaaaaaaagttccaaaaggagaggaaggaaggagtgtaatattaacatggctgaatgcctcacaagcattcttctccaa |
49679247 |
T |
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| Q |
226 |
aagcttggtgaaattcagatcaacaatggaaatagtgttg |
265 |
Q |
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| T |
49679246 |
aagcttggtgatattggggtcaataatggaaatagtgttg |
49679207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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