View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8355_high_11 (Length: 275)
Name: NF8355_high_11
Description: NF8355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8355_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 4633153 - 4633392
Alignment:
| Q |
20 |
aaaccaaactcaccataatagtatcatagtctagatatttggtcttgtacaattttatagcagctgtattcaaatatggttctgtccctgaattacctcc |
119 |
Q |
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| T |
4633153 |
aaaccaaactcaccataatagtatcatagtctagatatttggtcttgtacaattttatagcagctgtattcaaatatggttctgtccctgaatcacctcc |
4633252 |
T |
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| Q |
120 |
taagcaattcatatttaaccatatagttagaacaacagagcggcaaaatgtagctcaactgaccaagaacttaacaacccttctaaatatgcacaaagga |
219 |
Q |
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| T |
4633253 |
taagcaattcatatttaaccatatagatagaacaacagagcggcaaaatgtagctccactgaccaagaacttaacaacccttctaaatatgcacaaagga |
4633352 |
T |
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| Q |
220 |
agaaaaaatcaaatctgatatcatgataagtgtagttcat |
259 |
Q |
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| T |
4633353 |
agaaaaaatcaaatctgatatcatgataagcgtagttcat |
4633392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 19055807 - 19055770
Alignment:
| Q |
198 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
235 |
Q |
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| T |
19055807 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
19055770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 50807626 - 50807663
Alignment:
| Q |
198 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
235 |
Q |
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| T |
50807626 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
50807663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 50868251 - 50868214
Alignment:
| Q |
198 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
50868251 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
50868214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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