View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8355_high_12 (Length: 275)
Name: NF8355_high_12
Description: NF8355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8355_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 49015737 - 49015993
Alignment:
| Q |
18 |
cattgttgcaaagttgctaactacaacacttgtgggaactggttatggattgtctaacaatggtatttttatttgtttttatgatcacatgagatacttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49015737 |
cattgttgcaaagttgctaactacaacacttgtgggaactggttatggattgtctaacaatggtatttttatttgtttttatgatcacatgagatacttg |
49015836 |
T |
|
| Q |
118 |
ttatctttatcaatatggaaagtaaattttgattttgaaataagaaagttattacaattttaaatatacatgcatcaaatgctgtttttgttttaaatat |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49015837 |
ttatctttatcaatacggaaagtaaattttgattttgaaataagaaagttattacaattttaaatatacatgcatcaaatgctgtttttgttttaaatat |
49015936 |
T |
|
| Q |
218 |
ttgtaggagtctttcttaggtaccctatttttggattcattaaccgaatgcagtcat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
49015937 |
ttgtaggagtctttcttaggtaccctattgttggattcattaaccgaatgcagtcat |
49015993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University