View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8355_high_16 (Length: 233)
Name: NF8355_high_16
Description: NF8355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8355_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 1368630 - 1368824
Alignment:
| Q |
18 |
atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaagaatccaccaatgagaagattt |
117 |
Q |
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| T |
1368630 |
atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaggaatccaccaatgagaagattt |
1368729 |
T |
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| Q |
118 |
gtacaacatatttctctaataagaagccgcggttatcctctgatgcatgctcagagatgccagaaataattatcacaaaaattgagagtacgatg |
212 |
Q |
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| T |
1368730 |
gtacaacatatttctctaataagaagccgcggttatcctccgatgcatgctcagagatgccagaaataattatcaccgaaattgagagtacgatg |
1368824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 24840896 - 24840976
Alignment:
| Q |
18 |
atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaagaa |
98 |
Q |
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| T |
24840896 |
atgaatgtaactaagggtcagttacctaacgtgaatgttgctgatagttttgtcgccacaatagaagtatacattaaagaa |
24840976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 18180068 - 18179988
Alignment:
| Q |
18 |
atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaagaa |
98 |
Q |
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| T |
18180068 |
atgaatgtaactaagtgtcagttaccgaacgtgaatgttgctgacagttttgttgctacaatggaagaatacattaaagaa |
18179988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 5646419 - 5646347
Alignment:
| Q |
25 |
taactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaaga |
97 |
Q |
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| T |
5646419 |
taactaagggtcagttacctaacgtgaatgttgctgatagttttgttgccacaatggaagaatacatgaaaga |
5646347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 23571563 - 23571662
Alignment:
| Q |
108 |
gagaagatttgtacaacatatttctctaataagaagccgcggttatcctctgatgcatgctcagagatgccagaaataattatcacaaaaattgagagta |
207 |
Q |
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| T |
23571563 |
gagaagatttgtacaacagatttctctaatgagaagctacagttatcctccaatgcatgctcggatatgccaggaacaattatcaccgaaattgagagta |
23571662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 26375603 - 26375666
Alignment:
| Q |
18 |
atgaatgtaactaagtgtcagctagcgaacgtgaatgttgttgatagttttgttgccacaatgg |
81 |
Q |
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| T |
26375603 |
atgaatgtaactaagtgtcagttaccgaaagtgaatgttgctgatagttttattgccacaatgg |
26375666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 7657611 - 7657697
Alignment:
| Q |
107 |
tgagaagatttgtacaacatatttctctaataagaagccgcggttatcctctgatgcatgctcagagatgccagaaataattatcac |
193 |
Q |
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| T |
7657611 |
tgagaagatttgtacaacagatttctctaatgaaaagccgcagttatcctccgatgtctgctcggagatgccagaaacaattgtcac |
7657697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 28660106 - 28660058
Alignment:
| Q |
47 |
cgtgaatgttgttgatagttttgttgccacaatggaagaatacattaaa |
95 |
Q |
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| T |
28660106 |
cgtgaacgttgctgatagttttggtgccacattggaagaatacattaaa |
28660058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 52900489 - 52900523
Alignment:
| Q |
65 |
ttttgttgccacaatggaagaatacattaaagaat |
99 |
Q |
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| T |
52900489 |
ttttgttgccacaatggaagaatacattaaagaat |
52900523 |
T |
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