View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8355_high_6 (Length: 323)
Name: NF8355_high_6
Description: NF8355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8355_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 4259871 - 4259579
Alignment:
| Q |
16 |
ctttattggtgaaaccaaactaatattcattgcattctcatattcaaccaatcttccaacataagcttataaattaccctgaacactctcataagtaata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4259871 |
ctttattggtgaaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttataaattaccctgaacactctcataagtaata |
4259772 |
T |
|
| Q |
116 |
aacttctcaaacagtaggcaagggtggacagggagctgcatggggcactctttggttaagtagatctgtcgattaatggatttaaatcgggaagtgaagg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4259771 |
aacttctcaaacagtaggcaagggtggacagggagctgcatggggcactctttggttacgtagatctgtcgattaatggatttaaatcaggaagtgaagg |
4259672 |
T |
|
| Q |
216 |
tcagtcatgcgtagcgagaggcaaatcaatgtgttgatgtgcttgtaaatttaagatgttctttcagtcacactgtaatgttttatgattcat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4259671 |
tcagtcatgcgtagcgagaggcaaatcaatgtgttgatgtgcttgtaaatttaagatgttctttcagtcacactgtaatgttttatgattcat |
4259579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 4263493 - 4263201
Alignment:
| Q |
16 |
ctttattggtgaaaccaaactaatattcattgcattctcatattcaaccaatcttccaacataagcttataaattaccctgaacactctcataagtaata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4263493 |
ctttattggtgaaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttataaattaccctgaacactctcataagtaata |
4263394 |
T |
|
| Q |
116 |
aacttctcaaacagtaggcaagggtggacagggagctgcatggggcactctttggttaagtagatctgtcgattaatggatttaaatcgggaagtgaagg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4263393 |
aacttctcaaacagtaggcaagggtggacagggagctgcatggggcactctttggttacgtagatctgtcgattaatggatttaaatcaggaagtgaagg |
4263294 |
T |
|
| Q |
216 |
tcagtcatgcgtagcgagaggcaaatcaatgtgttgatgtgcttgtaaatttaagatgttctttcagtcacactgtaatgttttatgattcat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4263293 |
tcagtcatgcgtagcgagaggcaaatcaatgtgttgatgtgcttgtaaatttaagatgttctttcagtcacactgtaatgttttatgattcat |
4263201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University