View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8355_low_1 (Length: 907)

Name: NF8355_low_1
Description: NF8355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8355_low_1
NF8355_low_1
[»] chr6 (20 HSPs)
chr6 (7-889)||(21546576-21547458)
chr6 (7-157)||(29297945-29298093)
chr6 (330-563)||(32759703-32759935)
chr6 (298-563)||(10821971-10822235)
chr6 (330-564)||(30355996-30356229)
chr6 (40-163)||(21589312-21589435)
chr6 (77-163)||(33519176-33519262)
chr6 (303-501)||(9339081-9339280)
chr6 (303-418)||(22564652-22564769)
chr6 (272-403)||(27961108-27961238)
chr6 (303-513)||(22404357-22404569)
chr6 (426-501)||(34479919-34479994)
chr6 (459-561)||(3357878-3357978)
chr6 (410-491)||(9387421-9387502)
chr6 (292-350)||(9387505-9387563)
chr6 (434-549)||(16167576-16167689)
chr6 (459-501)||(6629235-6629277)
chr6 (425-552)||(10504926-10505051)
chr6 (299-445)||(21079820-21079967)
chr6 (303-403)||(14723579-14723678)
[»] chr4 (33 HSPs)
chr4 (286-591)||(10107954-10108258)
chr4 (304-569)||(25117970-25118236)
chr4 (299-557)||(19547151-19547408)
chr4 (243-399)||(11240995-11241151)
chr4 (309-538)||(7613495-7613723)
chr4 (335-564)||(18447575-18447803)
chr4 (355-501)||(17661743-17661892)
chr4 (330-517)||(22217123-22217312)
chr4 (382-504)||(22345868-22345993)
chr4 (363-503)||(15046715-15046854)
chr4 (363-503)||(15107570-15107709)
chr4 (330-487)||(10089486-10089645)
chr4 (355-447)||(13588566-13588660)
chr4 (299-489)||(1832153-1832344)
chr4 (637-717)||(25643770-25643850)
chr4 (638-716)||(7611532-7611611)
chr4 (303-403)||(11252232-11252331)
chr4 (436-550)||(15047520-15047632)
chr4 (436-550)||(15106792-15106904)
chr4 (337-501)||(17711099-17711266)
chr4 (330-403)||(20316301-20316373)
chr4 (382-507)||(22527733-22527861)
chr4 (641-717)||(20317498-20317574)
chr4 (349-473)||(9053828-9053954)
chr4 (426-513)||(16928705-16928792)
chr4 (847-889)||(6897920-6897962)
chr4 (431-501)||(8968305-8968375)
chr4 (353-403)||(9849860-9849910)
chr4 (459-513)||(17277628-17277682)
chr4 (637-711)||(22218328-22218402)
chr4 (459-513)||(26114462-26114516)
chr4 (460-513)||(16669983-16670036)
chr4 (383-504)||(17335538-17335662)
[»] chr2 (15 HSPs)
chr2 (309-563)||(32438790-32439043)
chr2 (291-571)||(34369053-34369333)
chr2 (7-143)||(18430119-18430255)
chr2 (330-570)||(27871022-27871252)
chr2 (335-504)||(27907657-27907829)
chr2 (245-403)||(30682248-30682405)
chr2 (354-403)||(16042814-16042863)
chr2 (517-565)||(18971036-18971085)
chr2 (450-534)||(25938313-25938394)
chr2 (337-513)||(28930055-28930234)
chr2 (305-501)||(26651742-26651938)
chr2 (305-445)||(32141496-32141638)
chr2 (426-501)||(18758094-18758169)
chr2 (459-501)||(11464576-11464618)
chr2 (478-565)||(16157354-16157439)
[»] chr1 (17 HSPs)
chr1 (242-501)||(26581367-26581628)
chr1 (244-571)||(20033162-20033489)
chr1 (337-504)||(27911855-27912025)
chr1 (330-550)||(17016962-17017181)
chr1 (299-563)||(14235383-14235647)
chr1 (242-563)||(26652312-26652629)
chr1 (334-549)||(12262231-12262446)
chr1 (309-491)||(10063070-10063253)
chr1 (431-550)||(12011417-12011534)
chr1 (299-403)||(27116322-27116425)
chr1 (637-717)||(24306671-24306751)
chr1 (637-718)||(17017438-17017519)
chr1 (459-501)||(15571950-15571992)
chr1 (459-513)||(16180500-16180554)
chr1 (459-513)||(21848414-21848468)
chr1 (431-504)||(26022185-26022258)
chr1 (462-541)||(44796874-44796950)
[»] chr3 (12 HSPs)
chr3 (238-551)||(26092650-26092964)
chr3 (356-550)||(5270961-5271156)
chr3 (382-538)||(23054758-23054913)
chr3 (309-468)||(3002884-3003043)
chr3 (404-563)||(25530933-25531091)
chr3 (353-561)||(20886605-20886813)
chr3 (335-565)||(23637345-23637574)
chr3 (354-561)||(27853068-27853276)
chr3 (309-538)||(18466807-18467034)
chr3 (460-504)||(820107-820151)
chr3 (518-561)||(28326450-28326494)
chr3 (459-500)||(3429484-3429525)
[»] chr7 (25 HSPs)
chr7 (309-504)||(24751309-24751503)
chr7 (355-547)||(13281882-13282075)
chr7 (244-563)||(2455076-2455395)
chr7 (256-501)||(20175888-20176133)
chr7 (242-432)||(10414321-10414512)
chr7 (255-552)||(2506865-2507162)
chr7 (312-440)||(8038874-8039004)
chr7 (330-573)||(2505568-2505810)
chr7 (256-433)||(10991019-10991199)
chr7 (354-448)||(1254849-1254945)
chr7 (392-504)||(9917957-9918072)
chr7 (392-504)||(9925869-9925984)
chr7 (272-548)||(24194169-24194442)
chr7 (355-447)||(9722299-9722393)
chr7 (383-501)||(8052612-8052733)
chr7 (303-473)||(5046939-5047108)
chr7 (425-565)||(4900547-4900685)
chr7 (426-501)||(25692582-25692657)
chr7 (335-501)||(26249210-26249379)
chr7 (459-504)||(15171024-15171069)
chr7 (303-415)||(21502734-21502848)
chr7 (638-708)||(8937976-8938047)
chr7 (303-403)||(8317544-8317644)
chr7 (299-403)||(9978179-9978283)
chr7 (847-889)||(39741456-39741498)
[»] chr5 (21 HSPs)
chr5 (272-499)||(28280077-28280307)
chr5 (426-563)||(20532713-20532851)
chr5 (428-563)||(17831427-17831560)
chr5 (426-563)||(107886-108021)
chr5 (382-562)||(18227348-18227527)
chr5 (272-500)||(24513259-24513489)
chr5 (385-514)||(25572647-25572778)
chr5 (299-403)||(20860233-20860337)
chr5 (272-349)||(32415902-32415979)
chr5 (459-564)||(13693333-13693437)
chr5 (343-448)||(17336468-17336576)
chr5 (383-504)||(23338731-23338855)
chr5 (426-541)||(24807421-24807533)
chr5 (299-403)||(28254785-28254889)
chr5 (848-889)||(33619001-33619042)
chr5 (459-515)||(17469819-17469875)
chr5 (459-564)||(28254634-28254737)
chr5 (334-501)||(29987749-29987919)
chr5 (269-403)||(19761651-19761783)
chr5 (297-379)||(20532619-20532700)
chr5 (459-504)||(26315012-26315057)
[»] scaffold0086 (2 HSPs)
scaffold0086 (330-563)||(12924-13156)
scaffold0086 (303-536)||(11855-12086)
[»] chr8 (21 HSPs)
chr8 (309-549)||(20268137-20268376)
chr8 (309-549)||(21054766-21055005)
chr8 (238-563)||(18836539-18836851)
chr8 (303-470)||(35861565-35861733)
chr8 (309-442)||(17649655-17649789)
chr8 (354-565)||(24518740-24518952)
chr8 (303-504)||(13833706-13833909)
chr8 (299-502)||(14076915-14077120)
chr8 (298-501)||(15557188-15557388)
chr8 (254-470)||(17976062-17976274)
chr8 (459-563)||(24381587-24381689)
chr8 (335-501)||(15176567-15176735)
chr8 (272-438)||(28904040-28904207)
chr8 (355-561)||(15058658-15058863)
chr8 (299-401)||(2638616-2638718)
chr8 (303-366)||(26829569-26829631)
chr8 (459-501)||(7984909-7984951)
chr8 (349-402)||(18007431-18007485)
chr8 (459-501)||(22501628-22501670)
chr8 (622-691)||(14006384-14006453)
chr8 (484-546)||(17973504-17973564)
[»] scaffold0072 (1 HSPs)
scaffold0072 (305-563)||(38025-38283)
[»] scaffold0085 (1 HSPs)
scaffold0085 (308-403)||(23896-23991)
[»] scaffold0451 (1 HSPs)
scaffold0451 (459-501)||(10353-10395)
[»] scaffold0015 (1 HSPs)
scaffold0015 (459-513)||(202093-202147)


Alignment Details
Target: chr6 (Bit Score: 847; Significance: 0; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 847; E-Value: 0
Query Start/End: Original strand, 7 - 889
Target Start/End: Original strand, 21546576 - 21547458
Alignment:
Q  7 gagaagcagagagcaatataatgttacatcagatacatgtgcgatacaacaaaaagaatgcaaataaaaccattacaaaaaattaagaggatttagcccc 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21546576 gagaagcaaagagcaatataatgttacatcagatacatgtgcgatacaacaaaaagaatgcaaataaaaccattacaaaaaattaaaaggatttagcccc 21546675  T
Q  107 catatgtggtagtcaaaagtgaagttgttgtgtttcgctttcagccagccataagataaaaatagggggtttatttattaatggtattagaggagtattc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21546676 catatgtggtagtcaaaagtgaagttgttgtgtttcgctttcagccagccataagataaaaatagggggtttatttattaatggtattagaggagtattc 21546775  T
Q  207 caaaaaattgctatgcgaagtaattagtaggtcaattatttttagtcagttttcatctagagtaaaggagtattagaaaattttcttattgtttttggga 306  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21546776 caaaaaattgatatgcgaagtaattagcaggtcaattatttttagtcagttttcatctagagtaaaggagtattagaaaattttcttattgtttttggga 21546875  T
Q  307 catttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatgaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21546876 catttgtaatattttctatatcaagtcatgtaattctagttttcctcgaaacatagcaattctagggtgttttagtgtaattcaagaagaaatcatgaat 21546975  T
Q  407 cgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgct 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  21546976 cgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcctcaaaagacattacaaagggaggaattttgtt 21547075  T
Q  507 cgcaagtcccaccaagacatcttatatggaagaaacacccaaaaagtcgaagaaacaagtgattatgtgcaaacttgcacactcaggtgccttgagcaca 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21547076 cgcaagtcccaccaagacatcttatatggaagaaacacccaaaaagtcgaagaaacaagtgattatgtgcaaacttgcacactcaggtgccttgagcaca 21547175  T
Q  607 tgccatgcgcttggatttacgtcttttgaataagtgatgagttcgcggggtttcatttcctaccatctgttgagttgcacctattgaccacacaggtttg 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21547176 tgccatgcgcttggatttacgtcttttgaataagtgatgagttcgcggggtttcatttcctaccatctgttgagttgcacctattgaccacacaggtttg 21547275  T
Q  707 tacgtatggggaacaatcctctcaaaagtcggaaatttcttacactgatggtaggaagaaaaattaaactttcagtaaaggaattaacaatcatttgatg 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21547276 tacgtatggggaacaatcctctcaaaagtcggaaatttcttacactgatggtaggaagaaaaactaaactttcagtaaaggaattaacaatcatttgatg 21547375  T
Q  807 ataatatctagagtcttttctctatttgacagccaaggagaaaaacttaatcacattcaaattgttctttgggatgctttaat 889  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21547376 ataatatctagagtcttttctctatttgacagccaaggagaaaaacttaatcacattcaaattgttctttgggatgctttaat 21547458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 29297945 - 29298093
Alignment:
Q  7 gagaagcagagagcaatataatgttacatcagatacatgtgcgatacaacaaaaagaatgcaaataaaaccattacaaaaaattaagaggatttagcccc 106  Q
    |||||||| ||| |||  |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||| |    
T  29297945 gagaagcaaagaacaaagtaatgttatatcagatacatgtgcgatacaacaaaaagaattcaaagaaaaccattacaagaaattaagatgatttagccac 29298044  T
Q  107 catatgtggtagtcaaaagtgaagttgttgtgtttcgctttcagccagcca 157  Q
    |  |||||||||||||||| ||||||||||||||| ||||| |||||||||    
T  29298045 c--atgtggtagtcaaaagcgaagttgttgtgtttggcttttagccagcca 29298093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 330 - 563
Target Start/End: Complemental strand, 32759935 - 32759703
Alignment:
Q  330 agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaa 427  Q
    ||||||||||||||| |||| | | |||||||||||| ||||| ||||||  ||||||||| ||||||||||||  ||||| ||| |  | |||| | ||    
T  32759935 agtcatgtaattctacttttcc-caaaacatagcaattctaggatgttttgatgtaattcacgaagaaatcatgcaaatcggcaatgtaagacatctgaa 32759837  T
Q  428 gacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatc 527  Q
    ||||||||||||| ||||||| | ||| |  ||||||||||||||| ||  ||||| |||||||||||||||||||| || || |||   ||||||||||    
T  32759836 gacttgtgaagaccttgggaagatcatgagtgaagattcaagaggcctcggaagacgttacaaagggaggaattttgttcccaggtc---ccaagacatc 32759740  T
Q  528 ttatatggaag-aaacacccaaaaagtcgaagaaaca 563  Q
    ||||||||||| |||||||||| ||  ||||||||||    
T  32759739 ttatatggaagcaaacacccaagaaaacgaagaaaca 32759703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 298 - 563
Target Start/End: Complemental strand, 10822235 - 10821971
Alignment:
Q  298 tttttgggacatttgtaatattttctatatcaa-gtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaaga 396  Q
    |||| |||||||||||||| ||||||||||    || ||||||||||| |||| ||  |||||||||||| ||||||||||||  ||||||| | |||||    
T  10822235 ttttcgggacatttgtaatgttttctatatttttgttatgtaattctaatttt-cttaaaacatagcaattctagggtgttttgatgtaatt-acgaaga 10822138  T
Q  397 aatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaaggg 494  Q
    |||||||  ||||| |||||| | ||||   ||||| |||||||| ||| | || | ||| || |||||||||| |||| |||||||||||||||||||     
T  10822137 aatcatgcaaatcggcaaagcaagacatacgaagacatgtgaagaattttgaaagatcatgaatgaagattcaaaaggcctcaaaagacattacaaagga 10822038  T
Q  495 aggaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaaaaagtcgaagaaaca 563  Q
    ||||||| || || ||||||   ||||||||||||||||||||| ||||| | |||||| ||| ||||||    
T  10822037 aggaattatgttcccaagtc---ccaagacatcttatatggaagcaaacatcgaaaaagacgatgaaaca 10821971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 330 - 564
Target Start/End: Complemental strand, 30356229 - 30355996
Alignment:
Q  330 agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaa 427  Q
    ||||||||||||||| || ||| ||||||||| |||| ||||| ||||||  ||||||||| | ||||||||||  ||||| |||||| | |||| | ||    
T  30356229 agtcatgtaattcta-ttattcccgaaacatatcaattctaggatgttttgatgtaattcacggagaaatcatgcaaatcggcaaagcaagacatatgaa 30356131  T
Q  428 gacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatc 527  Q
     |||| ||||||||||||||| | ||  || |||||||||||| || ||| |||| |||||| |||||| | || |  || || |||   ||||| ||||    
T  30356130 tacttatgaagactttgggaagatcaagaatgaagattcaagaagcctcagaagatattacagagggagaacttatattctcatgtc---ccaaggcatc 30356034  T
Q  528 ttatatggaag-aaacacccaaaaagtcgaagaaacaa 564  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  30356033 ttatatggaagcaaacacccaaaaagacgaagaaacaa 30355996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 21589312 - 21589435
Alignment:
Q  40 tacatgtgcgatacaacaaaaagaatgcaaataaaaccattacaaaaaattaagaggatttagcccccatatgtggtagtcaaaagtgaagttgttgtgt 139  Q
    ||||||||  |||||| |||||||||  ||| | || |||||||| ||||||||||| ||||||| ||| || ||||||||||||| |||||||||||||    
T  21589312 tacatgtgtcatacaagaaaaagaatttaaagagaatcattacaagaaattaagaggctttagccaccacatatggtagtcaaaagcgaagttgttgtgt 21589411  T
Q  140 ttcgctttcagccagccataagat 163  Q
    || | ||||||||| |||||||||    
T  21589412 tttgttttcagccaaccataagat 21589435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 33519262 - 33519176
Alignment:
Q  77 cattacaaaaaattaagaggatttagcccccatatgtggtagtcaaaagtgaagttgttgtgtttcgctttcagccagccataagat 163  Q
    |||||||||||||||| ||| ||||||| ||| |||||||||| |||||  |||||| |||||||||||||||  ||||||||||||    
T  33519262 cattacaaaaaattaaaagggtttagccaccacatgtggtagttaaaagcaaagttgatgtgtttcgctttcaatcagccataagat 33519176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 303 - 501
Target Start/End: Original strand, 9339081 - 9339280
Alignment:
Q  303 gggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatca 401  Q
    |||||||||||||| ||||||||||   |||  |||||||||| | |||| ||||||||||||||  |||||| ||||  ||||||||| ||||||||||    
T  9339081 gggacatttgtaatgttttctatatttgagtt-tgtaattctattctttc-cgaaacatagcaattttagggtattttgatgtaattcatgaagaaatca 9339178  T
Q  402 tg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaa 499  Q
    |   ||||  |||||| | |||| | |||| |||||| |||||| |||| |  | ||| |||||||||||||||||   |||||||||||||||||| ||    
T  9339179 ttcaaatctgcaaagcaagacatctgaagatttgtgaggactttaggaagatgaaaaatgaagattcaagaggcatttgaagacattacaaagggagtaa 9339278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 303 - 418
Target Start/End: Original strand, 22564652 - 22564769
Alignment:
Q  303 gggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgtt-ttagtgtaattcaagaagaaatc 400  Q
    |||||||||||||| ||||||||||   |||| ||||||||| ||| ||||||||||||||||||  ||||||||| ||  ||||||||| |||||||||    
T  22564652 gggacatttgtaatgttttctatatttgagtc-tgtaattct-gttcttctcgaaacatagcaattttagggtgttgttgatgtaattcacgaagaaatc 22564749  T
Q  401 atg--aatcgacaaagctaa 418  Q
    |||  |||||||||||||||    
T  22564750 atgcaaatcgacaaagctaa 22564769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 272 - 403
Target Start/End: Complemental strand, 27961238 - 27961108
Alignment:
Q  272 aggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatacta 370  Q
    |||||||||| |||| |||||||| | ||||||||| |||| ||| | ||||||||   | ||||||||||| | || ||| |||||||||||||| |||    
T  27961238 aggagtattataaaaatttcttat-gattttgggacgtttgaaatgtattctatatttgattcatgtaattcca-ttcttcccgaaacatagcaattcta 27961141  T
Q  371 gggtgttttagtgtaattcaagaagaaatcatg 403  Q
    |||||||||  ||||||||| ||||||||||||    
T  27961140 gggtgttttgatgtaattcacgaagaaatcatg 27961108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 303 - 513
Target Start/End: Original strand, 22404357 - 22404569
Alignment:
Q  303 gggacatttgtaatattttctatat-caagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatca 401  Q
    ||||| |||||||| |||||||||| | ||| |||||||||| ||||| || |||||||| ||||  ||||| |||||   |||||||| ||||||||||    
T  22404357 gggacttttgtaatgttttctatattcgagt-atgtaattctggttttcct-gaaacataccaattttagggggtttttaagtaattcatgaagaaatca 22404454  T
Q  402 tg--aatcgacaaagcta-aacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggagga 498  Q
    ||  ||||  |||| | | |||||   |||| |||||||||||||||||| ||||  || ||||||||||||||| |||  |||| |||||  |||||||    
T  22404455 tgcaaatcagcaaatcaagaacatccaaagatttgtgaagactttgggaagaccaagaatgaagattcaagaggcctcaggagactttacagtgggagga 22404554  T
Q  499 attttgctcgcaagt 513  Q
    |||||| || |||||    
T  22404555 attttgttcccaagt 22404569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 426 - 501
Target Start/End: Complemental strand, 34479994 - 34479919
Alignment:
Q  426 aagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    ||||||||||||||  ||||||| ||||| || ||| ||||||||||| ||||| || ||||||||||||||||||    
T  34479994 aagacttgtgaagatcttgggaagaccatgaatgaatattcaagaggcctcaaacgatattacaaagggaggaatt 34479919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 459 - 561
Target Start/End: Complemental strand, 3357978 - 3357878
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaaaaagtcgaa 557  Q
    ||||||||||  ||| |||||||||||||||||||||||||||||| || |||||    ||||||||| |||| |||||| |||| | ||||||| ||||    
T  3357978 gaagattcaaagggcctcaaaagacattacaaagggaggaattttgttcccaagt---tccaagacatgttatgtggaagcaaacgcacaaaaagacgaa 3357882  T
Q  558 gaaa 561  Q
    ||||    
T  3357881 gaaa 3357878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 410 - 491
Target Start/End: Complemental strand, 9387502 - 9387421
Alignment:
Q  410 caaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaa 491  Q
    |||||| ||| |||| ||||||||||||||||||||||  || || || | ||||||||||||| ||| |||||||||||||    
T  9387502 caaagcaaaatatttgaagacttgtgaagactttgggatgacaatgaatgtagattcaagaggcctcagaagacattacaaa 9387421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 350
Target Start/End: Complemental strand, 9387563 - 9387505
Alignment:
Q  292 ttattgtttttgggacatttgtaatattttctatatcaagtcatgtaattctagttttt 350  Q
    |||||||||| |||||||||||||| ||||||||||  |||||||||||| | ||||||    
T  9387563 ttattgttttcgggacatttgtaatgttttctatattgagtcatgtaattatggttttt 9387505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 434 - 549
Target Start/End: Complemental strand, 16167689 - 16167576
Alignment:
Q  434 tgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatat 533  Q
    |||||||||||| || ||||| || |||||||||| |||| ||| ||||||||||||| | |||| || |  || ||||||   || |||||||||||||    
T  16167689 tgaagactttggcaagaccatgaatgaagattcaataggcctcataagacattacaaaagaaggagttattttcccaagtc---ccgagacatcttatat 16167593  T
Q  534 ggaag-aaacacccaaa 549  Q
    ||||| |||||||||||    
T  16167592 ggaagaaaacacccaaa 16167576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 501
Target Start/End: Original strand, 6629235 - 6629277
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    ||||||||||||||| ||| ||||| |||||||||||||||||    
T  6629235 gaagattcaagaggcctcagaagactttacaaagggaggaatt 6629277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 425 - 552
Target Start/End: Complemental strand, 10505051 - 10504926
Alignment:
Q  425 caagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagac 524  Q
    |||||| | |||| |||| ||||| | ||| || ||||||||| ||| | ||  ||||||||||| |||||  ||||||| || ||||||   |||||||    
T  10505051 caagacatctgaaaacttcgggaagatcatcaatgaagattcatgagacctcggaagacattacagagggacaaattttgttcccaagtc---ccaagac 10504955  T
Q  525 atcttatatggaag-aaacacccaaaaag 552  Q
    |||||||||| ||| ||||||||||||||    
T  10504954 atcttatatgaaagcaaacacccaaaaag 10504926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 299 - 445
Target Start/End: Original strand, 21079820 - 21079967
Alignment:
Q  299 ttttgggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaa 397  Q
    |||| ||||||||| ||| ||||||||||   |||| |||||||||| | |||| ||| |||||| |||  || ||||||||  ||||||||||||||||    
T  21079820 tttttggacatttgcaatgttttctatatttgagtc-tgtaattctattatttc-cgatacatagaaattttatggtgttttgatgtaattcaagaagaa 21079917  T
Q  398 atcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgg 445  Q
    ||||||  ||||| |||||| | |||| | |||| | |||||||||||||    
T  21079918 atcatgcaaatcggcaaagcaagacatctgaagattagtgaagactttgg 21079967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 403
Target Start/End: Complemental strand, 14723678 - 14723579
Alignment:
Q  303 gggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatca 401  Q
    ||||| |||||||| ||||||||||   |||| |||||||||||||||||| |||||||||||||  |||||  ||||   |||||||| ||||||||||    
T  14723678 gggacttttgtaatgttttctatatttgagtc-tgtaattctagtttttct-gaaacatagcaattttaggggtttttgaagtaattcacgaagaaatca 14723581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 6e-58; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 286 - 591
Target Start/End: Complemental strand, 10108258 - 10107954
Alignment:
Q  286 attttcttattgtttttgggacatttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgta 385  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||  | |||||||||| || ||||||  ||||||||| |||  |||||||||||  ||||    
T  10108258 atttgcttatggtttttgggacatttctaatgttttctatattgaatcatgtaattataatttttccagaaacatagtaattatagggtgttttgatgta 10108159  T
Q  386 attcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagac 483  Q
    ||| ||||||||||||||  |||||||||| | |||||||| |||| |||||||||||||||||| ||||| || ||| || |||||||| ||| || ||    
T  10108158 attgaagaagaaatcatgcaaatcgacaaaacgaaacatttgaagatttgtgaagactttgggaagaccatgaatgaatatgcaagaggcctcagaaaac 10108059  T
Q  484 attacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaagaaacacccaaaaagtcgaagaaacaagtgattatgtgcaaacttg 583  Q
    |||||||||||||||||| |  || ||||||   ||||||||||||||||||||||||||||||||||| |  ||||| |||| |||| | |||||  ||    
T  10108058 attacaaagggaggaattattttcccaagtc---ccaagacatcttatatggaagaaacacccaaaaagacatagaaaaaagttattacgcgcaaaactg 10107962  T
Q  584 cacactca 591  Q
    ||||||||    
T  10107961 cacactca 10107954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 304 - 569
Target Start/End: Original strand, 25117970 - 25118236
Alignment:
Q  304 ggacatttgtaatatttt-ctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcat 402  Q
    ||||||||||||| |||| ||||||  ||||||||||||||||||||||  ||||||||||||| ||| ||||||||  |||||||||||||||||||||    
T  25117970 ggacatttgtaatttttttctatattgagtcatgtaattctagtttttcctgaaacatagcaattctaaggtgttttgatgtaattcaagaagaaatcat 25118069  T
Q  403 g--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaat 500  Q
    |  |||||||||||| ||| |||| |||| |||||||||||||||||| ||||| |  ||||||| |||||||    |||||||||||||||||||||||    
T  25118070 gcaaatcgacaaagcaaaatatttgaagaattgtgaagactttgggaagaccatgattgaagatttaagaggccatgaaagacattacaaagggaggaat 25118169  T
Q  501 tttgctcgcaagtcccaccaagacatcttatatggaa-gaaacacccaaaaagtcgaagaaacaagtgat 569  Q
    |||| || ||||||   |||||||||||||||||||| ||||| |  ||||||  |||||||||||||||    
T  25118170 tttgttcccaagtc---ccaagacatcttatatggaaggaaacgcgaaaaaagatgaagaaacaagtgat 25118236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 299 - 557
Target Start/End: Original strand, 19547151 - 19547408
Alignment:
Q  299 ttttgggacatttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaa 398  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||| ||||| ||||||| | |||| ||||||||||||  |||||||||||||||||    
T  19547151 ttttgggacacttgtaatgttttctatattaagtcatgtaattctag-ttttcccgaaacaaaacaattctagggtgttttgatgtaattcaagaagaaa 19547249  T
Q  399 tcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggag 496  Q
    |||||  ||||| ||||   |||||||| |||||||||||||| ||||  ||  |||| || ||||||||||||||| ||  ||||||||||||||||||    
T  19547250 tcatgcaaatcggcaaaataaaacatttgaagacttgtgaagattttgaaaagtccatgaatgaagattcaagaggcgtcggaagacattacaaagggag 19547349  T
Q  497 gaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaaaaagtcgaa 557  Q
     |||| || || |||||     ||||||||||||| |||||| ||||| |||||||| ||||    
T  19547350 aaattatgttctcaagt---ttcaagacatcttatgtggaagcaaacatccaaaaagacgaa 19547408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 243 - 399
Target Start/End: Complemental strand, 11241151 - 11240995
Alignment:
Q  243 tatttttagtcagttttcatctagagtaaaggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatcaagtcatgtaattc 342  Q
    |||||||| | |||||| ||||||| |  ||||||||||||| | ||  ||||  ||||||||||||||||||| |||||||| |  |||||||||||||    
T  11241151 tatttttatttagttttaatctagaatggaggagtattagaacaattgtttatgatttttgggacatttgtaatgttttctattttgagtcatgtaattc 11241052  T
Q  343 tagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaat 399  Q
    ||||||||| |||||||||| ||| ||||| ||||||   |||||||||||||||||    
T  11241051 tagtttttcccgaaacatagaaattctaggatgttttgaggtaattcaagaagaaat 11240995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 309 - 538
Target Start/End: Complemental strand, 7613723 - 7613495
Alignment:
Q  309 tttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aat 406  Q
    |||||||| |||||||| | | || ||||||||||||||||||||||||||| |||||  | |||||||||   || ||||||||||||||||||  |||    
T  7613723 tttgtaatgttttctatttga-gttatgtaattctagtttttctcgaaacatggcaattatggggtgttttgacgtgattcaagaagaaatcatgcaaat 7613625  T
Q  407 cgacaaagctaaacat-ttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgc 505  Q
    || |||||| |||||| || ||||||||||  ||  ||||||| ||||| ||  ||||||||||| || ||| ||||||||||||| ||| |||||||      
T  7613624 cggcaaagcaaaacatcttgaagacttgtgttgatattgggaaaaccatgaataaagattcaagacgcctcagaagacattacaaatggaagaattttat 7613525  T
Q  506 tcgcaagtcccaccaagacatcttatatggaag 538  Q
    || ||||||   |||| ||||||||||||||||    
T  7613524 tctcaagtc---ccaaaacatcttatatggaag 7613495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 335 - 564
Target Start/End: Original strand, 18447575 - 18447803
Alignment:
Q  335 tgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagactt 432  Q
    |||||||||| || ||||||||||||| ||||  |||||||||||| ||||||||| ||| ||||||||  |||||  ||||| | |||| | |||||||    
T  18447575 tgtaattcta-ttcttctcgaaacataacaattttagggtgttttaatgtaattcacgaacaaatcatgcaaatcggaaaagcaagacatctgaagactt 18447673  T
Q  433 gtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttata 532  Q
    ||||| |||||||||| | ||  || ||||||||||||||| | | || |||||||| |||||| |||| || ||  | |||   |||||||||||||||    
T  18447674 gtgaaaactttgggaagatcaagaaggaagattcaagaggccttagaaaacattacagagggagaaattatgttcctaggtc---ccaagacatcttata 18447770  T
Q  533 tggaag-aaacacccaaaaagtcgaagaaacaa 564  Q
    ||||||  ||||||||| ||| |||||||||||    
T  18447771 tggaagctaacacccaacaagacgaagaaacaa 18447803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 355 - 501
Target Start/End: Complemental strand, 17661892 - 17661743
Alignment:
Q  355 aaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacat-ttcaagacttgtgaagactttgggaacac 451  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||  ||||| || | | |||||| || ||||||||||||||   |||||| ||    
T  17661892 aaacatagcaattctagggtgttttgatgtaattcaagaagaaatcatgcaaatcggcataacaaaacatcttgaagacttgtgaagatcatgggaagac 17661793  T
Q  452 cataaacgaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
     || || || |||||||||||| ||| |||||||||| | ||||||||||    
T  17661792 tatgaatgacgattcaagaggcctcataagacattactaggggaggaatt 17661743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 330 - 517
Target Start/End: Original strand, 22217123 - 22217312
Alignment:
Q  330 agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaa 427  Q
    ||||||| |||||||||||||| ||||||||| || | ||||||||||||  ||||||||||||||| ||||||  |||||| ||||| ||   ||| ||    
T  22217123 agtcatgaaattctagtttttcccgaaacatatcagttctagggtgttttgatgtaattcaagaagatatcatgcaaatcgataaagcaaatattttgaa 22217222  T
Q  428 gacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtccca 517  Q
    || || ||||||  ||| ||| |||   || |||||||||| |||| ||  ||||||||||||||| |||||||||  || |||||||||    
T  22217223 gatttttgaagatcttgtgaagacctcgaatgaagattcaataggcctcgtaagacattacaaaggaaggaatttttttcccaagtccca 22217312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 382 - 504
Target Start/End: Complemental strand, 22345993 - 22345868
Alignment:
Q  382 tgtaattcaagaagaaatcatg--aatcgacaaagctaaacat-ttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaa 478  Q
    ||||||||||||||||||||||  ||| | |||  | |||||| || ||||||||||||||  || |||| |||||  | ||||||||||||||| |||     
T  22345993 tgtaattcaagaagaaatcatgcaaattggcaatacaaaacatcttgaagacttgtgaagatcttaggaagaccatgcatgaagattcaagaggcctcat 22345894  T
Q  479 aagacattacaaagggaggaattttg 504  Q
    ||||||||||||||||||||||||||    
T  22345893 aagacattacaaagggaggaattttg 22345868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 363 - 503
Target Start/End: Original strand, 15046715 - 15046854
Alignment:
Q  363 caatactagggtgttttagtgtaattcaagaagaaat-catgaatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaa 461  Q
    |||| |||| |||||||  ||||||||| |||||||| ||  ||||| |||||| | |||| | ||||||||||||||||||| ||| | ||| || |||    
T  15046715 caattctagtgtgttttgatgtaattcaggaagaaatgca--aatcggcaaagcaagacatctgaagacttgtgaagactttgagaagatcatgaatgaa 15046812  T
Q  462 gattcaagaggcatcaaaagacattacaaagggaggaatttt 503  Q
    |||||||||||| ||| | || |||||||| |||||||||||    
T  15046813 gattcaagaggcctcatatgatattacaaaaggaggaatttt 15046854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 363 - 503
Target Start/End: Complemental strand, 15107709 - 15107570
Alignment:
Q  363 caatactagggtgttttagtgtaattcaagaagaaat-catgaatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaa 461  Q
    |||| |||| |||||||  ||||||||| |||||||| ||  ||||| |||||| | |||| | ||||||||||||||||||| ||| | ||| || |||    
T  15107709 caattctagtgtgttttgatgtaattcaggaagaaatgca--aatcggcaaagcaagacatctgaagacttgtgaagactttgagaagatcatgaatgaa 15107612  T
Q  462 gattcaagaggcatcaaaagacattacaaagggaggaatttt 503  Q
    |||||||||||| ||| | || |||||||| |||||||||||    
T  15107611 gattcaagaggcctcatatgatattacaaaaggaggaatttt 15107570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 330 - 487
Target Start/End: Complemental strand, 10089645 - 10089486
Alignment:
Q  330 agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaaca-tttca 426  Q
    ||||||||||||| || ||| ||| |||||||| ||| ||||||||||||| | ||||||||||||||||||||  | ||  |||| | ||||| |||||    
T  10089645 agtcatgtaattccaggttt-ctcaaaacatagaaattctagggtgttttaatataattcaagaagaaatcatgcaagtctgcaaaacaaaacattttca 10089547  T
Q  427 agacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacatta 487  Q
    |||||||||||||  |||| || ||||| ||  ||||||||| |||| ||| |||| ||||    
T  10089546 agacttgtgaagatcttggaaagaccatcaaaaaagattcaataggcctcataagatatta 10089486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 355 - 447
Target Start/End: Complemental strand, 13588660 - 13588566
Alignment:
Q  355 aaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttggga 447  Q
    ||||||||||||  |||||||||||  |||||| ||  |||||||||||  |||||||||||||| |||| | |||||||||||| |||||||||    
T  13588660 aaacatagcaattatagggtgttttgatgtaatccacaaagaaatcatgcaaatcgacaaagctagacatctaaagacttgtgaatactttggga 13588566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 299 - 489
Target Start/End: Original strand, 1832153 - 1832344
Alignment:
Q  299 ttttgggacatttgtaatattttctatatc-aagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaa 397  Q
    ||||| || ||||||||| ||||||||||  |||||| |||||| || || ||| ||||||||| |||| || || ||||||  ||||||||| ||| ||    
T  1832153 ttttgagatatttgtaatgttttctatatttaagtcaagtaattata-ttcttcccgaaacataacaattcttgg-tgttttgatgtaattcacgaaaaa 1832250  T
Q  398 atcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattaca 489  Q
    ||||||  ||||| |||||| | |||| | |||||||||||| || ||||||| | ||  || ||| ||||||||||| ||| |||||||||||    
T  1832251 atcatgcaaatcggcaaagcaatacatctgaagacttgtgaaaaccttgggaagatcaagaaagaatattcaagaggcctcagaagacattaca 1832344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 637 - 717
Target Start/End: Original strand, 25643770 - 25643850
Alignment:
Q  637 taagtgatgagttcgcggggtttcatttcctaccatctgttgagttgcacctattgaccacacaggtttgtacgtatgggg 717  Q
    ||||||||||||| | ||||||| |||| |||  | ||||||||||||||||| | | ||||| |||||||||||||||||    
T  25643770 taagtgatgagtttgtggggttttattttctatgagctgttgagttgcacctacttatcacacgggtttgtacgtatgggg 25643850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 638 - 716
Target Start/End: Original strand, 7611532 - 7611611
Alignment:
Q  638 aagtgatgagttcgcggggtttcatt-tcctaccatctgttgagttgcacctattgaccacacaggtttgtacgtatggg 716  Q
    |||||||||||||| ||||||| ||| |||||||| |||| |||||||||||| ||| |||||  |||||||| ||||||    
T  7611532 aagtgatgagttcgtggggttttattatcctaccagctgtcgagttgcacctactgatcacacgagtttgtacctatggg 7611611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 403
Target Start/End: Original strand, 11252232 - 11252331
Alignment:
Q  303 gggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatca 401  Q
    ||||| |||||||||||||||||||   |||| ||| ||||||||||||| ||||||||||||||  ||||| |||||   |||||||| ||||||||||    
T  11252232 gggacttttgtaatattttctatatttgagtc-tgtgattctagtttttc-cgaaacatagcaattttagggggttttgaagtaattcacgaagaaatca 11252329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 436 - 550
Target Start/End: Complemental strand, 15047632 - 15047520
Alignment:
Q  436 aagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatgg 535  Q
    ||||||||||||| | ||  || ||||||||||||||| || |||||| |||| ||||||| | ||  | || ||||||   ||||||||||||||||||    
T  15047632 aagactttgggaagatcaagaatgaagattcaagaggcctcgaaagactttaccaagggagaagttacgttcccaagtc---ccaagacatcttatatgg 15047536  T
Q  536 aag-aaacacccaaaa 550  Q
    ||| ||||||||||||    
T  15047535 aagcaaacacccaaaa 15047520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 436 - 550
Target Start/End: Original strand, 15106792 - 15106904
Alignment:
Q  436 aagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatgg 535  Q
    ||||||||||||| | ||  || ||||||||||||||| || |||||| |||| ||||||| | ||  | || ||||||   ||||||||||||||||||    
T  15106792 aagactttgggaagatcaagaatgaagattcaagaggcctcgaaagactttaccaagggagaagttacgttcccaagtc---ccaagacatcttatatgg 15106888  T
Q  536 aag-aaacacccaaaa 550  Q
    ||| ||||||||||||    
T  15106889 aagcaaacacccaaaa 15106904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 501
Target Start/End: Complemental strand, 17711266 - 17711099
Alignment:
Q  337 taattctagtttttctcgaaacatagcaatactagggtgttttagt-gtaattcaagaagaaatcatg--aatcgacaaagcta-aacatttcaagactt 432  Q
    ||||||||||||| | ||||||||||||||  ||||| | ||| |  |||||||| ||||||||||||  ||||| |||| | | ||||| | |||| ||    
T  17711266 taattctagttttcc-cgaaacatagcaattttaggggggttttgaagtaattcacgaagaaatcatgcaaatcggcaaatcaagaacatctgaagaatt 17711168  T
Q  433 gtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    || |||||||| |||| ||||  || |||||||||||||||  ||  |||||||||| |||||||||||    
T  17711167 gtcaagactttcggaagaccaagaatgaagattcaagaggccccatgagacattacatagggaggaatt 17711099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 20316301 - 20316373
Alignment:
Q  330 agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg 403  Q
    |||||||||||||||||||||| | |||||| | |||  || ||||||||  ||||||||||||||||||||||    
T  20316301 agtcatgtaattctagtttttc-caaaacattgtaattttatggtgttttgatgtaattcaagaagaaatcatg 20316373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 507
Target Start/End: Complemental strand, 22527861 - 22527733
Alignment:
Q  382 tgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccata-aacgaagattcaagaggcatcaa 478  Q
    ||||||||| ||| ||||||||  ||||| |||||| | |||| | |||| |||||||||| |||| || |  | | || ||||||||||||||| ||||    
T  22527861 tgtaattcatgaaaaaatcatgcaaatcggcaaagcaagacatctgaagatttgtgaagacattggaaaaataaaagaatgaagattcaagaggcctcaa 22527762  T
Q  479 aagacattacaaagggaggaattttgctc 507  Q
    || || ||||||||||| |||||||||||    
T  22527761 aatacgttacaaagggaagaattttgctc 22527733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 641 - 717
Target Start/End: Complemental strand, 20317574 - 20317498
Alignment:
Q  641 tgatgagttcgcggggtttcatttcctaccatctgttgagttgcacctattgaccacacaggtttgtacgtatgggg 717  Q
    ||||||||||| ||||||| ||||||||||| ||||  ||||||||  | ||| |||||| |||||||||| |||||    
T  20317574 tgatgagttcgtggggttttatttcctaccagctgtcaagttgcacaaactgatcacacaagtttgtacgtgtgggg 20317498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 473
Target Start/End: Complemental strand, 9053954 - 9053828
Alignment:
Q  349 ttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttggg 446  Q
    ||||||||||||||||||  |||||| ||||  |||||| || ||||||||||||  ||||  |||||  | |||||| |||| | ||||||||||||||    
T  9053954 ttctcgaaacatagcaattttagggtattttgatgtaatgcacgaagaaatcatgcaaatcagcaaagtaagacatttgaagattagtgaagactttggg 9053855  T
Q  447 aacaccataaacgaagattcaagaggc 473  Q
    || | ||  || || ||||||||||||    
T  9053854 aagatcaagaatgatgattcaagaggc 9053828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 513
Target Start/End: Complemental strand, 16928792 - 16928705
Alignment:
Q  426 aagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagt 513  Q
    |||| ||||||||||||||| || ||||  || ||||||||||||||| ||| ||||| |||||| || |||| || ||||| |||||    
T  16928792 aagatttgtgaagactttggcaagaccaagaatgaagattcaagaggcctcagaagactttacaatggcaggagttatgctcccaagt 16928705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 847 - 889
Target Start/End: Complemental strand, 6897962 - 6897920
Alignment:
Q  847 aaaaacttaatcacattcaaattgttctttgggatgctttaat 889  Q
    ||||| ||||||||| |||||||||||||||||||| ||||||    
T  6897962 aaaaaattaatcacactcaaattgttctttgggatggtttaat 6897920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 431 - 501
Target Start/End: Original strand, 8968305 - 8968375
Alignment:
Q  431 ttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    |||||||||||||||||| ||||  || ||||||||||||| | ||| ||||| |||||  ||||||||||    
T  8968305 ttgtgaagactttgggaagaccaagaatgaagattcaagagacctcagaagactttacagtgggaggaatt 8968375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 9849860 - 9849910
Alignment:
Q  353 cgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg 403  Q
    ||||||||||||||  |||||||||||  ||||||||| ||||||||||||    
T  9849860 cgaaacatagcaattttagggtgtttttatgtaattcacgaagaaatcatg 9849910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 513
Target Start/End: Complemental strand, 17277682 - 17277628
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagt 513  Q
    ||||| ||||||||| ||| ||||| |||||||||||||||||||| || |||||    
T  17277682 gaagactcaagaggcctcataagactttacaaagggaggaattttgttcccaagt 17277628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 637 - 711
Target Start/End: Complemental strand, 22218402 - 22218328
Alignment:
Q  637 taagtgatgagttcgcggggtttcatttcctaccatctgttgagttgcacctattgaccacacaggtttgtacgt 711  Q
    ||||||||||||||  | ||||| |||||||||||  |||| | ||||||||| ||| ||||| |||||||||||    
T  22218402 taagtgatgagttcatgtggttttatttcctaccaattgttaacttgcacctactgatcacacgggtttgtacgt 22218328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 513
Target Start/End: Original strand, 26114462 - 26114516
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagt 513  Q
    ||||||||||||||| ||||||||| ||||||| ||| |||||||| || |||||    
T  26114462 gaagattcaagaggcctcaaaagactttacaaatggatgaattttgttcccaagt 26114516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 16669983 - 16670036
Alignment:
Q  460 aagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagt 513  Q
    ||||||||| |||| ||| ||||| |||||||||||||||||||| || |||||    
T  16669983 aagattcaaaaggcctcagaagacgttacaaagggaggaattttgttcccaagt 16670036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 504
Target Start/End: Original strand, 17335538 - 17335662
Alignment:
Q  383 gtaattcaagaagaaatcatg--aatcgacaaagcta-aacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaa 479  Q
    |||||||| ||||||||||||  |||||||||| | | |||||   |||| |||||||||||||||||| ||||  ||  |||||||||||| ||||       
T  17335538 gtaattcacgaagaaatcatgcaaatcgacaaatcaagaacatccgaagatttgtgaagactttgggaagaccaagaataaagattcaagagtcatcctg 17335637  T
Q  480 agacattacaaagggaggaattttg 504  Q
    |||| |||||  |||||||||||||    
T  17335638 agactttacagtgggaggaattttg 17335662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 8e-45; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 309 - 563
Target Start/End: Original strand, 32438790 - 32439043
Alignment:
Q  309 tttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aat 406  Q
    |||||||| |||||||| |  |||||||||| |||| |||| | |||||||||||||| ||||||||||| | ||||||||| ||||||||||||  |||    
T  32438790 tttgtaatgttttctatgttgagtcatgtaactctacttttcc-cgaaacatagcaattctagggtgtttaaatgtaattcacgaagaaatcatgtaaat 32438888  T
Q  407 cgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgct 506  Q
    ||||||| | ||| |||| ||||| ||||||||||||| ||| ||||| || ||||||||||||||| |||||| |||||||||||||||||||| || |    
T  32438889 cgacaaaacaaaatatttgaagacatgtgaagactttgagaagaccatgaatgaagattcaagaggcctcaaaaaacattacaaagggaggaattctgtt 32438988  T
Q  507 cgcaagtcccaccaagacatcttatatggaag-aaacacccaaaaagtcgaagaaaca 563  Q
    | ||||||   | |||||||||||||   ||| ||||||| |||||| ||||||||||    
T  32438989 cacaagtc---ctaagacatcttatactaaagcaaacaccaaaaaagacgaagaaaca 32439043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 291 - 571
Target Start/End: Complemental strand, 34369333 - 34369053
Alignment:
Q  291 cttattgtttttgggacatttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattca 390  Q
    ||||| |||||| |||||||||||||   || |||||  |||||||||||||||| ||||| ||||||||||||||  || ||||||||  | |||||||    
T  34369333 cttatggtttttaggacatttgtaatgaattttatattgagtcatgtaattctagcttttcccgaaacatagcaattttatggtgttttgatataattca 34369234  T
Q  391 agaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattac 488  Q
    ||| |||||||||  ||||| |||| | |||||||| |||||||| | ||||||||| || | ||| || ||||||||||||||| ||| |||| ||||     
T  34369233 agatgaaatcatgcaaatcggcaaaacaaaacatttgaagacttgagcagactttggaaagatcatgaatgaagattcaagaggcctcataagagattaa 34369134  T
Q  489 aaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaaaaagtcgaagaaacaagtgatta 571  Q
    ||| |||||||||||| || ||||||   | |||||||||||| |||||| |||||||||||| | |||||||| | |||||||    
T  34369133 aaatggaggaattttgttcccaagtc---cgaagacatcttatgtggaagcaaacacccaaaaggacgaagaaataggtgatta 34369053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 18430255 - 18430119
Alignment:
Q  7 gagaagcagagagcaatataatgttacatcagatacatgtgcgatacaacaaaaagaatgcaaataaaaccattacaaaaaattaagaggatttagcccc 106  Q
    |||||| | |||||||  ||||||||||||| |||||||| ||||||| |||||||||  |||| | |||||||| |||||||||||||||||||| |      
T  18430255 gagaagtaaagagcaaagtaatgttacatcatatacatgtacgatacaccaaaaagaaatcaaagagaaccattataaaaaattaagaggatttagtcat 18430156  T
Q  107 catatgtggtagtcaaaagtgaagttgttgtgtttcg 143  Q
    || |||||||||||||||   |||||| |||||||||    
T  18430155 cacatgtggtagtcaaaaacaaagttgatgtgtttcg 18430119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 330 - 570
Target Start/End: Complemental strand, 27871252 - 27871022
Alignment:
Q  330 agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaa 427  Q
    ||||||||||||||| |||||  ||||||||| |||| |||| |||||||  ||||||||||| ||||||||||  ||||| |||||| |||||||        
T  27871252 agtcatgtaattctaattttttccgaaacataacaattctagagtgttttgatgtaattcaaggagaaatcatgcaaatcggcaaagcaaaacatt---- 27871157  T
Q  428 gacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatc 527  Q
          | |||||||||| || ||||| |||||||||||||||||| |   ||||||||| |||| |||||||| || |  |||||    |||||||| |    
T  27871156 ------taaagactttggaaagaccatgaacgaagattcaagaggccttggaagacattataaagtgaggaattatgtttccaagt---tccaagacacc 27871066  T
Q  528 ttatat-ggaagaaacacccaaaaagtcgaagaaacaagtgatt 570  Q
    |||||| | || |||||||||||||| | ||| |||||||||||    
T  27871065 ttatatcgaaacaaacacccaaaaagacaaagcaacaagtgatt 27871022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 335 - 504
Target Start/End: Original strand, 27907657 - 27907829
Alignment:
Q  335 tgtaattctagtttttctcgaaacatagcaatactagggtgttttagt-gtaattcaagaagaaatcatg--aatcgacaaagcta-aacatttcaagac 430  Q
    ||||||||||||||| | ||||||||||||||  |||||| |||| |  |||||||| ||||||||||||  ||||| |||| | | ||||| | ||||     
T  27907657 tgtaattctagttttcc-cgaaacatagcaattttagggtttttttgaagtaattcacgaagaaatcatgcaaatcggcaaatcaagaacatctaaagaa 27907755  T
Q  431 ttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttg 504  Q
    |||| ||||||||||||| ||||   | ||||||||||||||| |||  |||| ||||| ||||||||||||||    
T  27907756 ttgtcaagactttgggaagaccaaggatgaagattcaagaggcctcaggagactttacatagggaggaattttg 27907829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 245 - 403
Target Start/End: Original strand, 30682248 - 30682405
Alignment:
Q  245 tttttagtcagttttcatctagagtaaaggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatcaagtcatgtaattcta 344  Q
    ||||| |||| |||||||| | | ||||| | |||||||| | || ||||| ||||| |||||| | ||||| ||||||||||  | ||||| || | ||    
T  30682248 ttttttgtcatttttcatcaaaaataaagaattattagaacaattgcttatggttttcgggacagt-gtaatgttttctatattgaatcatgcaactata 30682346  T
Q  345 gtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg 403  Q
    ||||  | |||||||||||||| |||||||||| |  |||| |||||||||||||||||    
T  30682347 gtttcccccgaaacatagcaattctagggtgttatgatgtagttcaagaagaaatcatg 30682405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 16042814 - 16042863
Alignment:
Q  354 gaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg 403  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  16042814 gaaacatagcaattttagggtgttttaatgtaattcaagaagaaatcatg 16042863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 517 - 565
Target Start/End: Original strand, 18971036 - 18971085
Alignment:
Q  517 accaagacatcttatatggaag-aaacacccaaaaagtcgaagaaacaag 565  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  18971036 accaagacatcttatatggaagcaaacacccaaaaagacgaagaaacaag 18971085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 450 - 534
Target Start/End: Complemental strand, 25938394 - 25938313
Alignment:
Q  450 accataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatg 534  Q
    |||||||| |||||||||| || | ||| ||||||||||||||||||||||| || || ||||||   | |||||||||||||||    
T  25938394 accataaatgaagattcaatagacttcagaagacattacaaagggaggaattatgttcccaagtc---ctaagacatcttatatg 25938313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 513
Target Start/End: Complemental strand, 28930234 - 28930055
Alignment:
Q  337 taattctagtttttctcgaaacatagcaatactag-ggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaa-catttcaagactt 432  Q
    ||||| |||||||||| |||||||||||||  ||| || |||||   |||||||| ||||||||||||  ||||| |||| | ||| ||| | |||| ||    
T  28930234 taattatagtttttct-gaaacatagcaattttagaggggttttgaagtaattcacgaagaaatcatgcaaatcggcaaatcaaaaacatctgaagaatt 28930136  T
Q  433 gtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagt 513  Q
    || ||||||||||||| ||||  || ||| ||||||||||| ||| ||||| |||||   |||||||||||| || |||||    
T  28930135 gtcaagactttgggaagaccaagaatgaatattcaagaggcctcagaagactttacagttggaggaattttgttcccaagt 28930055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 501
Target Start/End: Original strand, 26651742 - 26651938
Alignment:
Q  305 gacatttgtaatattttctata-tcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg 403  Q
    |||||||||||| ||||||||| | |||| ||||||||||| || ||||||||| ||||||||  || ||||||||  ||||||||| |||||||| |||    
T  26651742 gacatttgtaatgttttctatatttaagt-atgtaattcta-ttcttctcgaaa-atagcaattttaaggtgttttgttgtaattcatgaagaaattatg 26651838  T
Q  404 --aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
       |||| |||||| | |||||| |||| |||||||| | ||||||| |  |  || ||| |||| |||||| ||| ||||  ||||| |||||||||||    
T  26651839 catatcggcaaagcaagacatttgaagatttgtgaagtccttgggaagataaagaatgaatattctagaggcctcagaagatgttacagagggaggaatt 26651938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 445
Target Start/End: Original strand, 32141496 - 32141638
Alignment:
Q  305 gacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg 403  Q
    |||||||||||| ||||||||||   ||||||||||||| | | || || ||||||||||||| ||| | ||||||  || |||||| ||||||||||||    
T  32141496 gacatttgtaatgttttctatatttgagtcatgtaattcaattcttcct-gaaacatagcaattctaagatgttttgatgaaattcacgaagaaatcatg 32141594  T
Q  404 --aatcgacaaagctaaacatttcaagacttgtgaagactttgg 445  Q
      ||||| |||| | | |||| | ||||||||||||||| ||||    
T  32141595 caaatcggcaaaacaagacatctgaagacttgtgaagaccttgg 32141638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 501
Target Start/End: Complemental strand, 18758169 - 18758094
Alignment:
Q  426 aagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    ||||||||||||||||||||||| | ||  || ||||||||||||||| |||  |||| |||||| || |||||||    
T  18758169 aagacttgtgaagactttgggaagaacaagaatgaagattcaagaggcctcaggagactttacaatggcaggaatt 18758094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 501
Target Start/End: Original strand, 11464576 - 11464618
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    ||||||||||||||| ||||||||| | |||||||||||||||    
T  11464576 gaagattcaagaggcctcaaaagacttaacaaagggaggaatt 11464618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 478 - 565
Target Start/End: Original strand, 16157354 - 16157439
Alignment:
Q  478 aaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaaaaagtcgaagaaacaag 565  Q
    ||||| |||||||||||||||||||||  | ||||||   |||| |||||||  ||||||| |||| ||||||||| ||||||||||||    
T  16157354 aaagaaattacaaagggaggaattttgtgcccaagtc---ccaatacatctttcatggaagcaaacgcccaaaaagacgaagaaacaag 16157439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 1e-43; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 242 - 501
Target Start/End: Complemental strand, 26581628 - 26581367
Alignment:
Q  242 ttatttttagtcagttttcatctagagtaaaggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatcaagtcatgtaatt 341  Q
    ||||||| | |||||||||||| | | |  |||||||||||||   || | ||| ||||| |||||||||||||| ||||||||||  ||||||||||||    
T  26581628 ttattttcaatcagttttcatccataatggaggagtattagaattattgcctatggttttcgggacatttgtaatgttttctatattgagtcatgtaatt 26581529  T
Q  342 ctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaaga 439  Q
     ||||| |||  |||||||||||||  |||||||||||  ||||||  |||||||||||||   ||||| | |||| |||||||| ||| ||||||||||    
T  26581528 atagttcttcctgaaacatagcaattttagggtgttttgatgtaatcaaagaagaaatcatccaaatcggctaagcaaaacatttgaaggcttgtgaaga 26581429  T
Q  440 ctttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    |||||| || ||||| || ||||||||||||||||| | |||||||| ||||||||||||||    
T  26581428 ctttggaaagaccatgaatgaagattcaagaggcatgataagacatttcaaagggaggaatt 26581367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 244 - 571
Target Start/End: Original strand, 20033162 - 20033489
Alignment:
Q  244 atttttagtcagttttcatctagagtaaaggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatcaagtcatgtaattct 343  Q
    ||||| ||| |||||| ||| ||| || ||||||||||||| | || | ||| ||||| || ||||||||||| |||||||  | || | ||||||||||    
T  20033162 attttcagttagttttaatcaagaatagaggagtattagaacaattacctatggttttcggaacatttgtaatgttttctaattgaatt-atgtaattct 20033260  T
Q  344 agtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaa-gctaaacatttcaagacttgtgaagac 440  Q
    ||||||   | ||||||| |||| ||||||||||||| | || |||||||||||||||||  |||||||||| || ||| |||| ||||||| |||  |     
T  20033261 agttttctccaaaacataccaattctagggtgttttaatttagttcaagaagaaatcatgcaaatcgacaaaagcaaaaaatttgaagacttttgacaat 20033360  T
Q  441 tttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag-a 539  Q
     ||||||| ||||| || ||||||||||||||| ||| |||||||| ||||||||| |||| || || ||||||   ||||||||||||||||  ||| |    
T  20033361 attgggaagaccatgaatgaagattcaagaggcctcagaagacatttcaaagggagaaattatgttctcaagtc---ccaagacatcttatattaaagca 20033457  T
Q  540 aacacccaaaaagtcgaagaaacaagtgatta 571  Q
    ||||||||||||| |||||||||| |||||||    
T  20033458 aacacccaaaaagacgaagaaacatgtgatta 20033489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 337 - 504
Target Start/End: Complemental strand, 27912025 - 27911855
Alignment:
Q  337 taattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacat-ttcaagacttg 433  Q
    ||||||||||||||   ||||||||||||| ||||||||||||  ||||||||||||| ||||||||  ||||| |||||| |||| | || || |||||    
T  27912025 taattctagttttttcggaaacatagcaattctagggtgttttgatgtaattcaagaaaaaatcatgcaaatcggcaaagcaaaacgtcttgaaaacttg 27911926  T
Q  434 tgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttg 504  Q
    ||||||  ||||||| ||||| || ||||||||||||||| ||| |||||||||||||  |||||||||||    
T  27911925 tgaagatcttgggaagaccatgaatgaagattcaagaggcctcagaagacattacaaacagaggaattttg 27911855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 330 - 550
Target Start/End: Original strand, 17016962 - 17017181
Alignment:
Q  330 agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacat-ttca 426  Q
    |||| ||||||||||||||||  | |||||||||||| |||| |||||||  |||||| |||||| ||||||||  ||||| |||| | |||||| || |    
T  17016962 agtcttgtaattctagttttttccaaaacatagcaattctagagtgttttgatgtaatccaagaataaatcatgcaaatcggcaaatcaaaacatcttaa 17017061  T
Q  427 agacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacat 526  Q
    |||||| | ||||  ||||||||||| | || ||||||||||||||  |  ||||||||||||||||||||||||||  || ||||||   |||||||||    
T  17017062 agacttataaagatcttgggaacaccgtgaatgaagattcaagaggtcttgaaagacattacaaagggaggaatttt--tcccaagtc---ccaagacat 17017156  T
Q  527 cttatatggaa-gaaacacccaaaa 550  Q
    | ||||||||| |||||||||||||    
T  17017157 catatatggaaggaaacacccaaaa 17017181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 299 - 563
Target Start/End: Original strand, 14235383 - 14235647
Alignment:
Q  299 ttttgggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaa 397  Q
    |||||||||||||||||| ||||||||||   |||||||||||| || || ||| ||||||||||||||  |||||||||||  ||||||||| ||||||    
T  14235383 ttttgggacatttgtaatgttttctatatttgagtcatgtaattata-ttattcccgaaacatagcaattttagggtgttttgatgtaattcacgaagaa 14235481  T
Q  398 atcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaaggga 495  Q
    ||||||  ||| | |||| | | |||| | ||||||||| ||||||||||||| |   | || ||| |||||||| |  |||  |||||||||| |||||    
T  14235482 atcatgcaaattggcaaaacaagacatctgaagacttgttaagactttgggaagattgtgaaagaaaattcaagacgtctcaggagacattacagaggga 14235581  T
Q  496 ggaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaaaaagtcgaagaaaca 563  Q
    |||||| || |  ||||||    |||||||||||||||||||| |||||||||||| |  |||||||||    
T  14235582 ggaattatgttgccaagtc---tcaagacatcttatatggaagcaaacacccaaaaggatgaagaaaca 14235647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 242 - 563
Target Start/End: Complemental strand, 26652629 - 26652312
Alignment:
Q  242 ttatttttagtcagttttcatctagagtaaaggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatca-agtcatgtaat 340  Q
    ||||||||||| || ||| ||||| | || ||||||||||||||| || ||||| | |||||||||||||||||  |||| |||||   |||||||||||    
T  26652629 ttatttttagt-aggtttaatctataatagaggagtattagaaaaattgcttat-gattttgggacatttgtaacgttttatatatttgagtcatgtaat 26652532  T
Q  341 tctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaag 438  Q
    |||| |||||| | |||  ||| |||  || ||||||||  ||||||| | ||||||||||||  ||| |||||||  | |||||| || ||||||||||    
T  26652531 tcta-tttttcccaaaa--tagaaattataaggtgttttgatgtaatttacgaagaaatcatgcaaattgacaaagtaagacatttgaatacttgtgaag 26652435  T
Q  439 actttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag 538  Q
    ||||||| || | ||| || |||||||| | | || ||  |||| |||||| ||||| ||| |||| || ||||||   ||||||||||| |||||||||    
T  26652434 actttggaaagatcatgaatgaagattccacaagcctctgaagaaattacatagggatgaaatttgttctcaagtc---ccaagacatctcatatggaag 26652338  T
Q  539 -aaacacccaaaaagtcgaagaaaca 563  Q
     ||| |||||| ||| ||||||||||    
T  26652337 taaatacccaagaagacgaagaaaca 26652312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 334 - 549
Target Start/End: Original strand, 12262231 - 12262446
Alignment:
Q  334 atgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatgaa--tcgacaaagctaaacat-ttcaagac 430  Q
    |||||||||||||||||| ||||| ||||||    |||| ||||||  ||||||| ||||||||||||||||  | | |||| | | |||| || ||||     
T  12262231 atgtaattctagtttttcccgaaaaatagcagccataggatgttttgatgtaatttaagaagaaatcatgaaaattggcaaaacaatacatcttgaagag 12262330  T
Q  431 ttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatctta 530  Q
    ||| |||||  ||||||| ||||| || |||||||||| |||||||  |||| |||||||||||| ||||| || || ||||||   |||||||||||||    
T  12262331 ttgcgaagatcttgggaaaaccatgaatgaagattcaaaaggcatcggaagatattacaaagggaagaattatg-tcccaagtc---ccaagacatctta 12262426  T
Q  531 tatgga-agaaacacccaaa 549  Q
    ||||||  ||||||||||||    
T  12262427 tatggacggaaacacccaaa 12262446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 309 - 491
Target Start/End: Original strand, 10063070 - 10063253
Alignment:
Q  309 tttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aat 406  Q
    |||||||| |||| ||||  | |||||||||||||| ||||| || ||||||| |||| ||||| ||||||  ||||||| | ||| |||||||   |||    
T  10063070 tttgtaatgttttttatactatgtcatgtaattctatttttt-tcaaaacataacaattctaggatgttttgatgtaatttacgaataaatcatacaaat 10063168  T
Q  407 cgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaa 491  Q
    |  |||| | |||||||| || | ||| |||||||||| ||| ||||| |||||| ||| ||||||||||  |||||||||||||    
T  10063169 ctgcaaaacaaaacatttgaaaaattgcgaagactttgagaaaaccatgaacgaatatttaagaggcatcggaagacattacaaa 10063253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 431 - 550
Target Start/End: Original strand, 12011417 - 12011534
Alignment:
Q  431 ttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatctta 530  Q
    |||||||||| ||||||| | ||  || |||||||||| |||| ||||||||| ||||| ||| |||||||||| || || ||||||   ||||| ||||    
T  12011417 ttgtgaagaccttgggaagatcaagaatgaagattcaataggcctcaaaagactttacagaggaaggaattttgttctcaggtccca---agacaactta 12011513  T
Q  531 tatggaag-aaacacccaaaa 550  Q
    |||||||| ||||||||||||    
T  12011514 tatggaagcaaacacccaaaa 12011534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 299 - 403
Target Start/End: Original strand, 27116322 - 27116425
Alignment:
Q  299 ttttgggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaa 397  Q
    |||||||||||||||||| ||||||||||   ||| ||||||||||| || ||| |||||||||||||| ||||||| ||||  |||||||||  |||||    
T  27116322 ttttgggacatttgtaatgttttctatattttagt-atgtaattcta-ttcttcccgaaacatagcaattctagggtttttttatgtaattcacaaagaa 27116419  T
Q  398 atcatg 403  Q
    ||||||    
T  27116420 atcatg 27116425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 637 - 717
Target Start/End: Complemental strand, 24306751 - 24306671
Alignment:
Q  637 taagtgatgagttcgcggggtttcatttcctaccatctgttgagttgcacctattgaccacacaggtttgtacgtatgggg 717  Q
    ||||||||||||||| ||||||| |||||||| ||  |||||||||||||||| | | ||||| | ||||||||| |||||    
T  24306751 taagtgatgagttcgtggggttttatttcctatcagttgttgagttgcacctactaatcacacggatttgtacgtgtgggg 24306671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 718
Target Start/End: Complemental strand, 17017519 - 17017438
Alignment:
Q  637 taagtgatgagttcgcggggtttcatttcctaccatctgttgagttgcacctattgaccacacaggtttgtacgtatgggga 718  Q
    ||||||| ||||||| ||||||| ||||||||||| | || |||||||  ||| | | ||||| ||||||||||||||||||    
T  17017519 taagtgacgagttcgtggggttttatttcctaccagcagtcgagttgcggctactaatcacacgggtttgtacgtatgggga 17017438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 501
Target Start/End: Original strand, 15571950 - 15571992
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    ||||||||||||||||||||||||  ||||| |||||||||||    
T  15571950 gaagattcaagaggcatcaaaagagtttacacagggaggaatt 15571992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 513
Target Start/End: Complemental strand, 16180554 - 16180500
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagt 513  Q
    |||||||||| ||||||||| |||| ||||| |||||||||||||| || |||||    
T  16180554 gaagattcaaaaggcatcaagagactttacatagggaggaattttgttctcaagt 16180500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 513
Target Start/End: Complemental strand, 21848468 - 21848414
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagt 513  Q
    |||||||||||| || ||||||||| |||||||||| ||||||||| || |||||    
T  21848468 gaagattcaagatgcctcaaaagactttacaaagggtggaattttgttcccaagt 21848414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 504
Target Start/End: Complemental strand, 26022258 - 26022185
Alignment:
Q  431 ttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttg 504  Q
    ||||||||||||||| || ||||  ||  || |||||| |||| ||| ||||| ||||||||||||||||||||    
T  26022258 ttgtgaagactttggaaagaccaagaaataaaattcaaaaggcctcagaagactttacaaagggaggaattttg 26022185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 541
Target Start/End: Complemental strand, 44796950 - 44796874
Alignment:
Q  462 gattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaagaaa 541  Q
    |||||||||||| ||| ||||| ||||| ||||||||||| || || |||||    |||||||||||||||| |||||||    
T  44796950 gattcaagaggcctcagaagacgttacagagggaggaattatgttcccaagt---tccaagacatcttatattgaagaaa 44796874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 8e-42; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 238 - 551
Target Start/End: Complemental strand, 26092964 - 26092650
Alignment:
Q  238 tcaattatttttagtcagttttcatctagagtaaaggagtattagaa-aattttcttattgtttttgggacatttgtaatattttctatatcaagtcatg 336  Q
    ||||||||||| ||| |||||||||||||| || ||||||||||||| |||| ||| || ||||| |||||||||||||| ||||||||||  ||||||     
T  26092964 tcaattattttcagttagttttcatctagaatagaggagtattagaacaattgtct-atggttttcgggacatttgtaat-ttttctatattgagtcata 26092867  T
Q  337 taattctagtttttct--cgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagactt 432  Q
    |||||||||||||| |  |||||||||||||| ||| ||||||||  ||||||||||||||||||||||  |||||  ||||| |||||||| |  ||||    
T  26092866 taattctagttttttttccgaaacatagcaattctatggtgttttgatgtaattcaagaagaaatcatgcaaatcggtaaagcaaaacatttgataactt 26092767  T
Q  433 gtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttata 532  Q
    ||||| ||||||||||  |  | || |||||||||||| || |   |||||||||||||||||| |||| |  |  ||| ||   |||||||||||||||    
T  26092766 gtgaacactttgggaaggcactgaatgaagattcaagaagccttggaagacattacaaagggagaaattctttttccaaatc---ccaagacatcttata 26092670  T
Q  533 tggaag-aaacacccaaaaa 551  Q
    |||||| |||| ||||||||    
T  26092669 tggaagcaaacgcccaaaaa 26092650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 356 - 550
Target Start/End: Original strand, 5270961 - 5271156
Alignment:
Q  356 aacatagcaatactagggtgttttagtgtaattcaagaagaaatcatga--atcgacaaagctaaacat-ttcaagacttgtgaagactttgggaacacc 452  Q
    |||||||||||  |||||||||||| | ||||||||||||||||||||   || | ||| || |||||| || |||| |||| ||||  ||||||| |||    
T  5270961 aacatagcaattgtagggtgttttaatataattcaagaagaaatcatgctgattggcaatgcaaaacatcttgaagagttgtaaagatcttgggaagacc 5271060  T
Q  453 ataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaa-gaaacacccaaaa 550  Q
    || || ||||||||||||| ||||| |||| |||||||||||||||||| || || ||||||     |||||||||||||||||| |||||||||||||    
T  5271061 atgaatgaagattcaagagacatcataagaaattacaaagggaggaattatgttctcaagtc---ttaagacatcttatatggaaggaaacacccaaaa 5271156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 382 - 538
Target Start/End: Original strand, 23054758 - 23054913
Alignment:
Q  382 tgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaa 479  Q
    ||||||||| ||||||||||||  |||||  ||||| | |||| | ||||||| |||||||| |||||| | ||  || ||||||||||||||| |||||    
T  23054758 tgtaattcacgaagaaatcatgtaaatcggaaaagcaagacatctaaagacttatgaagactctgggaagatcaagaatgaagattcaagaggcctcaaa 23054857  T
Q  480 agacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag 538  Q
    ||| |||||||||||||||||| || ||  |||||   |||||||||||||||||||||    
T  23054858 agaaattacaaagggaggaattatgttcctaagtc---ccaagacatcttatatggaag 23054913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 309 - 468
Target Start/End: Complemental strand, 3003043 - 3002884
Alignment:
Q  309 tttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aat 406  Q
    |||||||| |||||||| | | |||||||||||||| |||| || ||||||||||||| ||| ||||||||  ||||||||||||||||||||||  |||    
T  3003043 tttgtaatgttttctatttga-gtcatgtaattctacttttcct-gaaacatagcaattctacggtgttttgatgtaattcaagaagaaatcatgcaaat 3002946  T
Q  407 cgacaaagctaaacat-ttcaagacttgtgaagactttgggaacaccataaacgaagattcaa 468  Q
    || |||||| ||||||  | |||||||||||||| | | |||| ||| |||| ||||||||||    
T  3002945 cggcaaagcaaaacatcatgaagacttgtgaaga-tcttggaagaccgtaaatgaagattcaa 3002884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 404 - 563
Target Start/End: Original strand, 25530933 - 25531091
Alignment:
Q  404 aatcgacaaagctaaacatttc-aagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattt 502  Q
    ||||| |||||| |||||| || ||||||||||||||  ||||||| | ||| || ||||||||||||||| |   |||||||||||||| ||||||||     
T  25530933 aatcggcaaagcaaaacatctcgaagacttgtgaagatcttgggaagatcatgaatgaagattcaagaggccttgtaagacattacaaagagaggaatta 25531032  T
Q  503 tgctcgcaagtcccaccaagacatcttatatgg-aagaaacacccaaaaagtcgaagaaaca 563  Q
    || ||  |||||   |||||| ||||||||||| |||||||||| |||||| ||||| ||||    
T  25531033 tgttcctaagtc---ccaagatatcttatatggaaagaaacaccaaaaaagacgaagtaaca 25531091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 353 - 561
Target Start/End: Complemental strand, 20886813 - 20886605
Alignment:
Q  353 cgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaaca 450  Q
    |||||||| |||||  || || |||||  ||||||||| ||||||||||||  ||||| |||||| | |||| | |||| |||||||||| ||| ||| |    
T  20886813 cgaaacatggcaattttaaggcgttttgatgtaattcacgaagaaatcatgcaaatcggcaaagcaagacatatgaagatttgtgaagaccttgagaaga 20886714  T
Q  451 ccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaaa 549  Q
      |  || |||||| |||||||| ||| |||||||||||||||||  ||||||  || |||||    ||||||||||||||||||||| ||||||| |||    
T  20886713 tgaagaatgaagatccaagaggcctcataagacattacaaagggattaattttattcccaagt---tccaagacatcttatatggaagcaaacacctaaa 20886617  T
Q  550 aagtcgaagaaa 561  Q
    ||| | ||||||    
T  20886616 aagacaaagaaa 20886605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 335 - 565
Target Start/End: Complemental strand, 23637574 - 23637345
Alignment:
Q  335 tgtaattctagtttttctcgaaacatagcaatactagggtgttttag-tgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagact 431  Q
    |||||||||| |||| || |||| |||||||| |||||||||||| | ||||||||| ||| ||||||||  |||||||||| | | |||| | ||||      
T  23637574 tgtaattctatttttcct-gaaatatagcaattctagggtgtttttgatgtaattcacgaataaatcatggaaatcgacaaatcaagacatctgaagatc 23637476  T
Q  432 tgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttat 531  Q
     |||||||||||||||| | ||  || ||||||||||| ||| ||| |||||||||  ||||||| ||||||| || |  |||   ||||||||||||||    
T  23637475 agtgaagactttgggaagatcaagaatgaagattcaagtggcctcataagacatta-gaagggagaaattttgttcccgggtc---ccaagacatcttat 23637380  T
Q  532 atggaag-aaacacccaaaaagtcgaagaaacaag 565  Q
    | ||||| ||||| |||||| | |||| |||||||    
T  23637379 acggaagcaaacaaccaaaaggacgaaaaaacaag 23637345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 354 - 561
Target Start/End: Original strand, 27853068 - 27853276
Alignment:
Q  354 gaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatgaat--cgacaaagctaaacatttcaagacttgtgaagactttgggaacac 451  Q
    |||||||||||||  |||| | ||||  ||||||||| |||||||||||| ||  || |||||| | |||| | |||| |||||||||| || |||| |     
T  27853068 gaaacatagcaattttaggatattttgttgtaattcatgaagaaatcatgcatatcggcaaagcaagacatatgaagatttgtgaagaccttaggaagat 27853167  T
Q  452 cata-aacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaaa 549  Q
     | | || ||||||||||||||| ||| || || ||||| ||| ||||| | || || |||||    ||||||||||||||||||||| |||||||||||    
T  27853168 gaaagaatgaagattcaagaggcctcagaatacgttacagaggtaggaaatatgttctcaagt---tccaagacatcttatatggaagcaaacacccaaa 27853264  T
Q  550 aagtcgaagaaa 561  Q
    ||| ||||||||    
T  27853265 aagacgaagaaa 27853276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 309 - 538
Target Start/End: Original strand, 18466807 - 18467034
Alignment:
Q  309 tttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aat 406  Q
    |||||||| |||||||| || |||||||||||| || |||||| |||||||||| |||  || ||||||||| ||||| | ||||| |||| |||  |||    
T  18466807 tttgtaatgttttctat-tcgagtcatgtaatttta-tttttcccgaaacatagaaattatatggtgttttaatgtaactaaagaaaaaataatgcaaat 18466904  T
Q  407 cgacaaagctaaacatt-tcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgc 505  Q
     | |||||| ||| ||  | |||||| ||  |||  ||||||| || || ||| |||||||||||||  ||| ||||| ||| |||||||| |||||||     
T  18466905 tggcaaagcaaaatatcattaagactagtttagatattgggaagactatgaacaaagattcaagaggactcagaagactttaaaaagggagtaattttgt 18467004  T
Q  506 tcgcaagtcccaccaagacatcttatatggaag 538  Q
    || |||||   ||||| ||||||||||||||||    
T  18467005 tcccaagt---accaaaacatcttatatggaag 18467034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 460 - 504
Target Start/End: Original strand, 820107 - 820151
Alignment:
Q  460 aagattcaagaggcatcaaaagacattacaaagggaggaattttg 504  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||    
T  820107 aagattcaagaggcctcaaaagacgttacagagggaggaattttg 820151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 518 - 561
Target Start/End: Original strand, 28326450 - 28326494
Alignment:
Q  518 ccaagacatcttatatggaag-aaacacccaaaaagtcgaagaaa 561  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||    
T  28326450 ccaagacatcttatatggaagcaaacacccaaaaagacgaagaaa 28326494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 500
Target Start/End: Original strand, 3429484 - 3429525
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaat 500  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  3429484 gaagattcaagagacctcaaaagactttacaaagggaggaat 3429525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 5e-37; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 309 - 504
Target Start/End: Original strand, 24751309 - 24751503
Alignment:
Q  309 tttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aat 406  Q
    |||||||| ||||||||||  ||||||||||||||| ||||||   ||||||  |||| ||||||||||||  ||||||||| ||||||| ||||  |||    
T  24751309 tttgtaatcttttctatattgagtcatgtaattcta-tttttccaaaaacat--caattctagggtgttttgatgtaattcacgaagaaaccatgcaaat 24751405  T
Q  407 cgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttg 504  Q
    ||||||||| |||||||| ||||||| |||||| |||||||| || || || ||||||||||||||| ||| |||||||||||||||||| |||||||    
T  24751406 cgacaaagcaaaacatttgaagacttttgaagattttgggaagacaatgaatgaagattcaagaggcctcagaagacattacaaagggagaaattttg 24751503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 355 - 547
Target Start/End: Original strand, 13281882 - 13282075
Alignment:
Q  355 aaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacat-ttcaagacttgtgaagactttgggaacac 451  Q
    |||||||||||| ||| |||||| |   |||||||||||||| ||||||  ||||  |||||| |||||| || || |||||||||||  ||||||| ||    
T  13281882 aaacatagcaattctacggtgttctcacgtaattcaagaagatatcatgcaaatcagcaaagcaaaacatcttgaatacttgtgaagatcttgggaaaac 13281981  T
Q  452 cataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaa-gaaacaccca 547  Q
    ||| || ||||||||||||||| |||||||| ||||||||||||||||||||| || ||||||   |||||||||||||| ||||| ||||||||||    
T  13281982 catgaatgaagattcaagaggcctcaaaagatattacaaagggaggaattttgttcccaagtc---ccaagacatcttatctggaaggaaacaccca 13282075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 244 - 563
Target Start/End: Complemental strand, 2455395 - 2455076
Alignment:
Q  244 atttttagtcagttttcatctagagtaaaggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatcaagtcatgtaattct 343  Q
    ||||||| | |||||| ||| | | |||| |||||||| || | ||||  || |||||||||||||||||||| |||||||| | | |||||||||||||    
T  2455395 atttttatttagttttaatccaaaataaatgagtattataacaatttcccatagtttttgggacatttgtaatgttttctatttga-gtcatgtaattct 2455297  T
Q  344 agtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatt-tcaagacttgtgaagac 440  Q
    |||||||| ||||||| |||||| ||| ||||||| | ||||||| |||||||||||| |  ||||| |||||| ||||||| | || | |||||||||     
T  2455296 agtttttcgcgaaacaaagcaattcta-ggtgtttga-tgtaatttaagaagaaatcacgcaaatcggcaaagcaaaacattctaaatatttgtgaagat 2455199  T
Q  441 tttgggaacaccata--aacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag 538  Q
      |||||| ||||||  || |||||||||||| || || ||||| ||||| |||  | ||||| || || ||||||   |||||||| |||||||| |||    
T  2455198 catgggaagaccatatgaatgaagattcaagatgcctcgaaagatattaccaagaaatgaattatgttctcaagtc---ccaagacaacttatatgaaag 2455102  T
Q  539 -aaacacccaaaaagtcgaagaaaca 563  Q
     |||||||||||||| ||||||||||    
T  2455101 taaacacccaaaaagacgaagaaaca 2455076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 256 - 501
Target Start/End: Complemental strand, 20176133 - 20175888
Alignment:
Q  256 ttttcatctagagtaaaggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcg 354  Q
    |||||||||||||||   ||||||||||  | || ||||| | |||||||||||||||||| ||||||||||   | ||||||||||||| |||| | ||    
T  20176133 ttttcatctagagtagcagagtattagattaattgcttat-gattttgggacatttgtaat-ttttctatattttattcatgtaattctaattttcc-cg 20176037  T
Q  355 aaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacacc 452  Q
    ||||| |||||| ||||||||||||  ||||||||| ||||||||  ||  ||||| |||||| | |||| | || | |||||||||||||||||| | |    
T  20176036 aaacacagcaattctagggtgttttgatgtaattcatgaagaaattttgcaaatcggcaaagcaagacatctgaaaaattgtgaagactttgggaagatc 20175937  T
Q  453 ataaacgaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    || || ||||||||||||||| ||  |||||| ||||||||||||||||    
T  20175936 atgaatgaagattcaagaggcctcggaagacaatacaaagggaggaatt 20175888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 242 - 432
Target Start/End: Original strand, 10414321 - 10414512
Alignment:
Q  242 ttatttttagtcagttttcatctagagtaaaggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatcaagtcatgtaatt 341  Q
    ||||||| ||| |||||||||| ||| |||||||||||||||| |  ||| ||| ||||| ||||||||||||||  ||||||| |  |||| |||||||    
T  10414321 ttattttcagttagttttcatcaagaataaaggagtattagaagaaattcctatagttttcgggacatttgtaat-gtttctatgttgagtcgtgtaatt 10414419  T
Q  342 ctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagactt 432  Q
     ||||||| ||  ||| |||||||| |||| |||||||  | ||||||||||||||||||||  |||||||||| | |||||||| |||||||    
T  10414420 atagttttcctaaaaaaatagcaattctagagtgttttgatataattcaagaagaaatcatgcaaatcgacaaaacaaaacatttgaagactt 10414512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 255 - 552
Target Start/End: Original strand, 2506865 - 2507162
Alignment:
Q  255 gttttcatctagagtaaaggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatca-agtcatgtaattctagtttttctc 353  Q
    ||||||||| ||| |  ||||||||||||| | || |||||  |||| | |||||||||||| ||||||||||   ||||||||||||||| || ||| |    
T  2506865 gttttcatccagaatcgaggagtattagaacaattgcttatgattttcgagacatttgtaatgttttctatatttgagtcatgtaattcta-ttattccc 2506963  T
Q  354 gaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacac 451  Q
     |||||||| |||  |||||||||||  | ||||||| ||||||||||||  ||||  |||||| | |||| | ||||||||  ||||||||||||| |     
T  2506964 aaaacatagaaattttagggtgttttgatctaattcacgaagaaatcatgcaaatcagcaaagcaagacatcttaagacttgcaaagactttgggaagat 2507063  T
Q  452 cataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaaaa 550  Q
    || | | |||||||||| |||| |  |||||||||||||||||||| |||||| || || |||   ||||||||| ||||| ||||| |||||| |||||    
T  2507064 caaatatgaagattcaataggccttcaaagacattacaaagggagggattttgttcccaggtc---ccaagacatattatacggaagcaaacactcaaaa 2507160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 312 - 440
Target Start/End: Complemental strand, 8039004 - 8038874
Alignment:
Q  312 gtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcat--gaatcga 409  Q
    ||||| ||||||||||  | ||||||||||||||||||||  ||||||||||||| ||||||||||||  |||||||||| ||||||||||   ||||||    
T  8039004 gtaatgttttctatattgattcatgtaattctagtttttcctgaaacatagcaattctagggtgttttgatgtaattcaaaaagaaatcatccaaatcga 8038905  T
Q  410 caaagctaaacatttcaagacttgtgaagac 440  Q
    |||| | |||||||| | |||||| ||||||    
T  8038904 caaaacaaaacatttgaggacttgcgaagac 8038874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 330 - 573
Target Start/End: Complemental strand, 2505810 - 2505568
Alignment:
Q  330 agtcatgtaattctagtttttctcgaaacatagcaatacta-gggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacat-ttc 425  Q
    |||||||||||||||||||| | ||||||||||||||  || |||||||||  ||||||||||||||||||||||  ||||| |||||  |||||| ||     
T  2505810 agtcatgtaattctagttttcc-cgaaacatagcaattttaagggtgttttgatgtaattcaagaagaaatcatgcaaatcgtcaaagaaaaacatcttg 2505712  T
Q  426 aagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagaca 525  Q
    || ||||||||||| |||||||| || || || ||||||  |||| || || |||||||||| ||| |||  |||||||||| |||||    |   ||||    
T  2505711 aaaacttgtgaaga-tttgggaatacaatgaatgaagatataagaagcctcgaaagacattagaaaaggaaaaattttgctcccaagt---gcagggaca 2505616  T
Q  526 tcttatatgg-aagaaacacccaaaaagtcgaagaaacaagtgattatg 573  Q
    ||| |||||| || |||||||||||| || |||||||||||||||||||    
T  2505615 tctcatatggaaaaaaacacccaaaaggt-gaagaaacaagtgattatg 2505568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 256 - 433
Target Start/End: Original strand, 10991019 - 10991199
Alignment:
Q  256 ttttcatctagagtaaaggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatcaagtcatgtaattctagtttttctcga 355  Q
    ||||||| |||| || ||||||||||||| | || ||| |||||||    ||||| |||||  ||||||||| ||||||||||||||||||||||| | |    
T  10991019 ttttcatttagaatagaggagtattagaacaattactttttgttttcataacattcgtaatgctttctatataaagtcatgtaattctagtttttcccaa 10991118  T
Q  356 aacatagcaatactagggtgttttagtgtaattcaagaagaaatcat---gaatcgacaaagctaaacatttcaagacttg 433  Q
    || |||  ||| ||||||||||||  ||||||| ||||||||||| |    ||||| |||||| |||||||| ||||||||    
T  10991119 aagatataaattctagggtgttttgatgtaatttaagaagaaatctttgcaaatcggcaaagcaaaacatttgaagacttg 10991199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 354 - 448
Target Start/End: Original strand, 1254849 - 1254945
Alignment:
Q  354 gaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaa 448  Q
    |||||||||||||  |||||||||||  ||||||||| |||||||||| |  |||||||||||| | |||||| ||||||||| |||||||||||||    
T  1254849 gaaacatagcaattatagggtgttttgatgtaattcacgaagaaatcaagcaaatcgacaaagcaagacatttgaagacttgtcaagactttgggaa 1254945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 392 - 504
Target Start/End: Complemental strand, 9918072 - 9917957
Alignment:
Q  392 gaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccata-aacgaagattcaagaggcatcaaaagacattac 488  Q
    ||||||||||||  || || |||||| | |||||| |||| ||||||||| |||||||| | || | || ||||||||||||||| ||||||||||||||    
T  9918072 gaagaaatcatgcaaaccggcaaagcaagacatttgaagatttgtgaagattttgggaagatcaaagaatgaagattcaagaggcctcaaaagacattac 9917973  T
Q  489 aaagggaggaattttg 504  Q
    | |||||| |||||||    
T  9917972 atagggagaaattttg 9917957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 392 - 504
Target Start/End: Complemental strand, 9925984 - 9925869
Alignment:
Q  392 gaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccata-aacgaagattcaagaggcatcaaaagacattac 488  Q
    ||||||||||||  || || |||||| | |||||| |||| ||||||||| |||||||| | || | || ||||||||||||||| ||||||||||||||    
T  9925984 gaagaaatcatgcaaaccggcaaagcaagacatttgaagatttgtgaagattttgggaagatcaaagaatgaagattcaagaggcctcaaaagacattac 9925885  T
Q  489 aaagggaggaattttg 504  Q
    | |||||| |||||||    
T  9925884 atagggagaaattttg 9925869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 272 - 548
Target Start/End: Complemental strand, 24194442 - 24194169
Alignment:
Q  272 aggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactag 371  Q
    ||||||||||||| | || | | | |||||| |||||||| |||| ||||||||||  |||   |||||| ||||||| | | |||||||| ||| |||     
T  24194442 aggagtattagaacaattgcatgtggtttttaggacatttataatgttttctatattgagt---gtaattatagttttaccctaaacatagaaattctaa 24194346  T
Q  372 ggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaag 469  Q
    ||||||||   ||||||| ||||||| |||||  || ||  ||| | |||||||| ||||| | |||||||||||| || | ||| || ||||||||||     
T  24194345 ggtgttttgacgtaattctagaagaagtcatgcaaaccgggaaaacaaaacatttgaagacctatgaagactttggaaagatcatcaatgaagattcaat 24194246  T
Q  470 aggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaa 548  Q
    || | ||| |||| ||| |||||| ||||| |||| || ||||||   |||||||||||||| || ||| ||||||||||    
T  24194245 agccctcataagatattgcaaaggaaggaactttgttctcaagtc---ccaagacatcttatgtgaaagcaaacacccaa 24194169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 355 - 447
Target Start/End: Complemental strand, 9722393 - 9722299
Alignment:
Q  355 aaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttggga 447  Q
    ||||||||||||  |||||||||||  |||||| ||  |||||||||||  |||||||||||||| |||| | |||||||||||| |||||||||    
T  9722393 aaacatagcaattatagggtgttttgatgtaatccacaaagaaatcatgcaaatcgacaaagctagacatctaaagacttgtgaatactttggga 9722299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 383 - 501
Target Start/End: Original strand, 8052612 - 8052733
Alignment:
Q  383 gtaattcaagaagaaatcatg--aatcgacaaagcta-aacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaa 479  Q
    |||||||| ||||||||||||  |||||||||| | | ||||| | |||| |||| ||||||||||||| |||| ||| |||||||||| |||| ||||     
T  8052612 gtaattcacgaagaaatcatgcaaatcgacaaatcaagaacatctgaagaattgtcaagactttgggaagaccaaaaatgaagattcaacaggcctcaag 8052711  T
Q  480 agacattacaaagggaggaatt 501  Q
    |||| |||||  ||||||||||    
T  8052712 agactttacatggggaggaatt 8052733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 303 - 473
Target Start/End: Original strand, 5046939 - 5047108
Alignment:
Q  303 gggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatca 401  Q
    |||||||||||||| ||||||||||   ||| ||||||||    || ||| ||||||||||||||  ||| |||||||  ||||||||| ||||||||||    
T  5046939 gggacatttgtaatgttttctatatttgagttatgtaatt----ttcttcccgaaacatagcaattttagagtgttttgatgtaattcacgaagaaatca 5047034  T
Q  402 tg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggc 473  Q
    ||  ||||| |||| | | |||| | || | |||||||||||||||||| | ||  || |||||||||||||||    
T  5047035 tgcaaatcggcaaatcaagacatctgaaaatttgtgaagactttgggaagatcaataatgaagattcaagaggc 5047108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 425 - 565
Target Start/End: Original strand, 4900547 - 4900685
Alignment:
Q  425 caagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagac 524  Q
    ||||| || ||||||||||||||| | ||| |  |||||||||||| || ||| |||||| |||||| |||  ||||| | || ||||||   |||| ||    
T  4900547 caagaattttgaagactttgggaagatcatgattgaagattcaagaagcctcagaagacaatacaaaaggaaaaatttggttcccaagtc---ccaatac 4900643  T
Q  525 atcttatatggaag-aaacacccaaaaagtcgaagaaacaag 565  Q
    ||| |||| ||||| |||||||||||||| ||||||||||||    
T  4900644 atcgtatacggaagcaaacacccaaaaagacgaagaaacaag 4900685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 426 - 501
Target Start/End: Complemental strand, 25692657 - 25692582
Alignment:
Q  426 aagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    |||| ||||||| |||||||||| | || ||| ||||||||||||||| ||| ||||| |||||| ||||||||||    
T  25692657 aagaattgtgaatactttgggaagatcaaaaatgaagattcaagaggcctcagaagactttacaatgggaggaatt 25692582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 335 - 501
Target Start/End: Original strand, 26249210 - 26249379
Alignment:
Q  335 tgtaattctagtttttctcgaaacatagcaatactagggtgttttagt-gtaattcaagaagaaatcatg--aatcgacaaagctaaa-catttcaagac 430  Q
    ||||||||||||||| ||  ||||||||||||  ||||| ||||| |  |||||||| ||||||||||||  ||||| |||| | ||| |||   ||||     
T  26249210 tgtaattctagttttccta-aaacatagcaattttagggggtttttgaagtaattcacgaagaaatcatgcaaatcggcaaatcaaaatcatccgaagat 26249308  T
Q  431 ttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    |||||||||||||||||| ||||  || ||||||||||||||| |||  |||| |||||| || |||||||    
T  26249309 ttgtgaagactttgggaagaccaagaatgaagattcaagaggcttcaggagactttacaatggaaggaatt 26249379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 504
Target Start/End: Original strand, 15171024 - 15171069
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaattttg 504  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  15171024 gaagattcaagaggcctcagaagactttacaaagggaggaattttg 15171069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 415
Target Start/End: Complemental strand, 21502848 - 21502734
Alignment:
Q  303 gggacatttgtaatattttctata-tcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttag-tgtaattcaagaagaaatc 400  Q
    |||||||||||||| ||||||| | |  |||| |||||||||| || ||| |||||||||||||| |||||||||||| |  |||||||| |||||||||    
T  21502848 gggacatttgtaatgttttctagacttgagtc-tgtaattcta-ttcttcccgaaacatagcaattctagggtgtttttgaggtaattcacgaagaaatc 21502751  T
Q  401 atg--aatcgacaaagc 415  Q
    |||  ||||||||||||    
T  21502750 atgcaaatcgacaaagc 21502734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 708
Target Start/End: Complemental strand, 8938047 - 8937976
Alignment:
Q  638 aagtgatgagttcgcggggtttcatt-tcctaccatctgttgagttgcacctattgaccacacaggtttgta 708  Q
    |||||||||||||| ||||||| ||| |||||||| |||| |||||||||||| ||| |||||  |||||||    
T  8938047 aagtgatgagttcgtggggttttattatcctaccagctgtcgagttgcacctactgatcacacgagtttgta 8937976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 303 - 403
Target Start/End: Original strand, 8317544 - 8317644
Alignment:
Q  303 gggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttag-tgtaattcaagaagaaatc 400  Q
    ||||| |||||||| ||||||||||   |||| ||||||||||||||||| ||||||||||||||   |||||||||| |  |||||||| |||||||||    
T  8317544 gggacttttgtaatgttttctatatttgagtc-tgtaattctagtttttc-cgaaacatagcaatttgagggtgtttttgaagtaattcacgaagaaatc 8317641  T
Q  401 atg 403  Q
    |||    
T  8317642 atg 8317644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 299 - 403
Target Start/End: Complemental strand, 9978283 - 9978179
Alignment:
Q  299 ttttgggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatacta-gggtgttttagtgtaattcaagaaga 396  Q
    ||||||||| |||||||| ||||||||||   |||| |||||||||||||||||| |||||||||||||   | ||| ||||||  |||||||| |||||    
T  9978283 ttttgggacttttgtaatgttttctatatttgagtc-tgtaattctagtttttct-gaaacatagcaatttgaggggggttttaaagtaattcacgaaga 9978186  T
Q  397 aatcatg 403  Q
    |||||||    
T  9978185 aatcatg 9978179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 847 - 889
Target Start/End: Complemental strand, 39741498 - 39741456
Alignment:
Q  847 aaaaacttaatcacattcaaattgttctttgggatgctttaat 889  Q
    ||||| ||||||||| |||||||||||||||||||| ||||||    
T  39741498 aaaaaattaatcacactcaaattgttctttgggatggtttaat 39741456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 272 - 499
Target Start/End: Complemental strand, 28280307 - 28280077
Alignment:
Q  272 aggagtattagaa-aattttcttattgtttttgggacattt-gtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatact 369  Q
    ||||||||||||| |||| ||| || ||||||||||||||| ||||| |||| ||| | | || |||||||| |||||||||| |||||||| |||| ||    
T  28280307 aggagtattagaacaattgtct-atggtttttgggacattttgtaatgttttatatttga-gttatgtaattatagtttttctagaaacataacaattct 28280210  T
Q  370 agggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacat-ttcaagacttgtgaagactttgggaacaccataaacgaagattc 466  Q
    || |||||||  ||||||||||||||||||||||  ||||| |||||| |||||| || ||||||||||||||  ||||||| ||||| || ||||||||    
T  28280209 agagtgttttgatgtaattcaagaagaaatcatgcaaatcggcaaagcgaaacatcttgaagacttgtgaagatcttgggaagaccatgaatgaagattc 28280110  T
Q  467 aagaggcatcaaaagacattacaaagggaggaa 499  Q
    ||  ||| || | ||||||||||||||||||||    
T  28280109 aatgggcctcgacagacattacaaagggaggaa 28280077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 426 - 563
Target Start/End: Original strand, 20532713 - 20532851
Alignment:
Q  426 aagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagaca 525  Q
    ||||||||||||||| |||||||| |||| ||| |||  ||||||||| ||| |||||||||||||||||| ||||||| || ||||||| |  |  |||    
T  20532713 aagacttgtgaagaccttgggaaccccatgaacaaagcctcaagaggcctcacaagacattacaaagggagaaattttgttcccaagtccgaagagtaca 20532812  T
Q  526 tcttatatggaa-gaaacacccaaaaagtcgaagaaaca 563  Q
    ||||||| |||| ||||||||||||||| ||||||||||    
T  20532813 tcttataaggaacgaaacacccaaaaagacgaagaaaca 20532851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 428 - 563
Target Start/End: Complemental strand, 17831560 - 17831427
Alignment:
Q  428 gacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatc 527  Q
    ||||||||||| ||||||||| |  ||||| |||| |||||||||| | | |||| ||||||||||| | ||||||| |||||||||   ||| ||||||    
T  17831560 gacttgtgaaggctttgggaagataataaatgaaggttcaagaggccttagaagatattacaaagggggaaattttgttcgcaagtc---ccatgacatc 17831464  T
Q  528 ttatatggaag-aaacacccaaaaagtcgaagaaaca 563  Q
    || |||||||| |||||||||||||| ||||||||||    
T  17831463 ttgtatggaagcaaacacccaaaaagacgaagaaaca 17831427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 426 - 563
Target Start/End: Original strand, 107886 - 108021
Alignment:
Q  426 aagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagaca 525  Q
    ||||||||| ||||||||||||| | ||| || ||||||||||||||||||| || |||||||||| ||||||||| || || ||||||   ||| ||||    
T  107886 aagacttgtaaagactttgggaagatcatgaatgaagattcaagaggcatcagaaaacattacaaatggaggaattatgttctcaagtc---ccatgaca 107982  T
Q  526 tcttatatggaa-gaaacacccaaaaagtcgaagaaaca 563  Q
    ||||| ||||||  || ||||||| ||| ||||||||||    
T  107983 tcttacatggaaccaatcacccaataagacgaagaaaca 108021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 562
Target Start/End: Complemental strand, 18227527 - 18227348
Alignment:
Q  382 tgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaa 479  Q
    ||||||||| ||||||||||||  ||||  |||||| | |||| | |||| |||||| ||||||||||| |  |  || ||||||||||||| | ||| |    
T  18227527 tgtaattcacgaagaaatcatgcaaatcagcaaagcaagacatctaaagatttgtgaggactttgggaagattaagaatgaagattcaagagacctcata 18227428  T
Q  480 agacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaagaaacacccaaaaagtcgaagaaac 562  Q
    || ||||||| |||||| |||| || || ||||| |||   ||||||||||||||||||||| ||||| ||||  ||||||||    
T  18227427 aggcattacagagggagaaattatgttcccaagttcca---agacatcttatatggaagaaaaacccataaagatgaagaaac 18227348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 272 - 500
Target Start/End: Original strand, 24513259 - 24513489
Alignment:
Q  272 aggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactag 371  Q
    |||||||||||| ||||| | ||| | |||||||||||||||||| |||| |||||       ||||||||||||||| | ||||||||| ||||  |||    
T  24513259 aggagtattagagaatttgcctat-gattttgggacatttgtaatgttttatatatttgaatttgtaattctagttttcc-cgaaacatatcaattttag 24513356  T
Q  372 ggtgttttagt-gtaattcaagaagaaatcatg--aatcgacaaagctaaa-catttcaagacttgtgaagactttgggaacaccataaacgaagattca 467  Q
    || ||||| |  |||||||| ||||||||||||  |||| ||||| | ||| ||| | |||| |||||||||||||||||| | ||  || |||||||||    
T  24513357 ggggtttttgaagtaattcacgaagaaatcatgcaaatcaacaaatcaaaaacatatgaagatttgtgaagactttgggaagatcaagaaagaagattca 24513456  T
Q  468 agaggcatcaaaagacattacaaagggaggaat 500  Q
    |||||| |||| |||   |||| ||||||||||    
T  24513457 agaggcctcaagagattgtacagagggaggaat 24513489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 514
Target Start/End: Original strand, 25572647 - 25572778
Alignment:
Q  385 aattcaagaagaaatcatgaat--cgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaaga 482  Q
    |||||| |||||||||||| ||  ||||||||| | |||| | |||| |||||||||| ||||||| |  |  || ||||||||||||||  ||  ||||    
T  25572647 aattcacgaagaaatcatgcatatcgacaaagcaagacatctgaagatttgtgaagaccttgggaagatgaagaaggaagattcaagaggtctcggaaga 25572746  T
Q  483 cattacaaagggaggaattttgctcgcaagtc 514  Q
    ||||||||||||||||||| || || ||||||    
T  25572747 cattacaaagggaggaattatgttcccaagtc 25572778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 299 - 403
Target Start/End: Complemental strand, 20860337 - 20860233
Alignment:
Q  299 ttttgggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttag-tgtaattcaagaaga 396  Q
    ||||||||| |||||||||||||||||||   |||| ||||||||||||||| ||||||||||||||||  ||||| ||||| |  |||||||| ||| |    
T  20860337 ttttgggacttttgtaatattttctatatttgagtc-tgtaattctagtttt-ctcgaaacatagcaattttagggggtttttgaagtaattcacgaata 20860240  T
Q  397 aatcatg 403  Q
    |||||||    
T  20860239 aatcatg 20860233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 349
Target Start/End: Original strand, 32415902 - 32415979
Alignment:
Q  272 aggagtattagaaaattttcttattgtttttgggacattt-gtaatattttctatatcaagtcatgtaattctagtttt 349  Q
    |||||| |||||| | |||| ||| ||||||||||||||| ||||| ||||| || |||||||||||||||||||||||    
T  32415902 aggagttttagaacaatttcctatggtttttgggacattttgtaatgttttc-atttcaagtcatgtaattctagtttt 32415979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 459 - 564
Target Start/End: Complemental strand, 13693437 - 13693333
Alignment:
Q  459 gaagattcaagaggcatcaaaagaca-ttacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatgg-aagaaacacccaaaaagtcga 556  Q
    ||||||||||||||| || ||||||| ||  ||| |||||| ||||| || || |||   |||||||||||||||||| || |||||||||||||| |||    
T  13693437 gaagattcaagaggcctcgaaagacattttaaaaaggaggagttttgttctcatgtc---ccaagacatcttatatggaaacaaacacccaaaaagacga 13693341  T
Q  557 agaaacaa 564  Q
    ||||||||    
T  13693340 agaaacaa 13693333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 448
Target Start/End: Original strand, 17336468 - 17336576
Alignment:
Q  343 tagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaaca-tttcaagacttgtgaaga 439  Q
    |||||||||  |||||||| |||| ||||||||||||  ||||||||||||| ||||||||  ||||| |||| | ||||| ||| ||||| ||||||||    
T  17336468 tagtttttcctgaaacatatcaattctagggtgttttgatgtaattcaagaataaatcatgcaaatcggcaaaacaaaacattttaaagacatgtgaaga 17336567  T
Q  440 ctttgggaa 448  Q
      |||||||    
T  17336568 tattgggaa 17336576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 383 - 504
Target Start/End: Complemental strand, 23338855 - 23338731
Alignment:
Q  383 gtaattcaagaagaaatcatg--aatcgacaaagcta-aacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaa 479  Q
    |||||||| ||||||||||||  ||||| |||| | | ||||| | |||| |||||||| ||||||||| ||||  || ||||||||||||| | |||      
T  23338855 gtaattcacgaagaaatcatgcaaatcggcaaatcaagaacatctgaagaattgtgaaggctttgggaagaccaagaatgaagattcaagagtcctcagg 23338756  T
Q  480 agacattacaaagggaggaattttg 504  Q
    |||| |||||| |||||||||||||    
T  23338755 agactttacaatgggaggaattttg 23338731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 426 - 541
Target Start/End: Original strand, 24807421 - 24807533
Alignment:
Q  426 aagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagaca 525  Q
    |||||||||||| |  || |||| ||||| || |||||||||||||||  || |||| |||||| ||||||| ||| || || ||| ||   ||||||||    
T  24807421 aagacttgtgaaaatcttcggaagaccatgaatgaagattcaagaggccccagaagaaattacagagggagggattgtgttcccaaatc---ccaagaca 24807517  T
Q  526 tcttatatggaagaaa 541  Q
    ||||||||||||||||    
T  24807518 tcttatatggaagaaa 24807533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 403
Target Start/End: Complemental strand, 28254889 - 28254785
Alignment:
Q  299 ttttgggacatttgtaatattttctata-tcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaa 397  Q
    ||||||||||||| |||||||||||||| |  ||| |||||||||||  ||||| |||||||||||||| ||   |||||||  || |||||| ||||||    
T  28254889 ttttgggacatttataatattttctatatttgagtaatgtaattcta-cttttcccgaaacatagcaattctttagtgttttgatgcaattcacgaagaa 28254791  T
Q  398 atcatg 403  Q
    ||||||    
T  28254790 atcatg 28254785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 848 - 889
Target Start/End: Complemental strand, 33619042 - 33619001
Alignment:
Q  848 aaaacttaatcacattcaaattgttctttgggatgctttaat 889  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  33619042 aaaaattaatctcattcaaattgttctttgggatgctttaat 33619001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 17469819 - 17469875
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcc 515  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||| || || |||||||    
T  17469819 gaagattcaagaggcctcataagactttacaaagggaggaattatgttcccaagtcc 17469875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 564
Target Start/End: Complemental strand, 28254737 - 28254634
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaaaaagtcgaa 557  Q
    |||||||||| |||| ||| ||||||||||||| ||||||||| || ||  ||||    ||||||||||||| ||||||| ||||||| ||||||  |||    
T  28254737 gaagattcaaaaggcctcataagacattacaaatggaggaattatgttcagaagt---tccaagacatcttacatggaagcaaacaccaaaaaagatgaa 28254641  T
Q  558 gaaacaa 564  Q
    |||||||    
T  28254640 gaaacaa 28254634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 334 - 501
Target Start/End: Complemental strand, 29987919 - 29987749
Alignment:
Q  334 atgtaattctagtttttctcgaaacatagcaatactagggtgttttagt-gtaattcaagaagaaatcatg--aatcgacaaagctaaac-atttcaaga 429  Q
    |||||||||||||||| | ||||||||| ||||  |||||  |||| |  ||| |||| ||||||||||||  |||||||||| | | || || | ||||    
T  29987919 atgtaattctagttttcc-cgaaacataacaattttaggggttttttgaagtacttcacgaagaaatcatgcaaatcgacaaatcaagaccatctgaaga 29987821  T
Q  430 cttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
     |||||||||||||||||| |||| ||| ||||||||||||| | |||  |||| |||||  ||||||||||    
T  29987820 tttgtgaagactttgggaagaccaaaaatgaagattcaagagacctcatgagactttacagtgggaggaatt 29987749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 403
Target Start/End: Original strand, 19761651 - 19761783
Alignment:
Q  269 taaaggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatc-aagtcatgtaattctagtttttctcgaaacatagcaata 367  Q
    ||||||| |||||||  | ||||||||| |||| | |||||| ||||| ||||||||||  ||||| |||||||||| || ||| | ||||||||||||     
T  19761651 taaaggattattagattaatttcttattatttt-gtgacattcgtaatgttttctatatttaagtc-tgtaattcta-ttcttcccaaaacatagcaatt 19761747  T
Q  368 ctagggtgttttagtgtaattcaagaagaaatcatg 403  Q
     |||| ||||||  ||||||||| ||||||||||||    
T  19761748 ttaggatgttttgttgtaattcacgaagaaatcatg 19761783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 297 - 379
Target Start/End: Original strand, 20532619 - 20532700
Alignment:
Q  297 gtttttgggacatttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgtttt 379  Q
    |||||| ||||||||||||  |||||||| | | |||||||||||||||| |||   ||||||||||||| ||| ||||||||    
T  20532619 gtttttaggacatttgtaacgttttctatttga-gtcatgtaattctagtattttatgaaacatagcaattctatggtgtttt 20532700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 26315057 - 26315012
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaattttg 504  Q
    ||||||||||||||| ||| ||||| |||||||||||| |||||||    
T  26315057 gaagattcaagaggcctcataagactttacaaagggagaaattttg 26315012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 330 - 563
Target Start/End: Original strand, 12924 - 13156
Alignment:
Q  330 agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaa 427  Q
    |||||||| |||||| |||| || ||||||||||||| ||||| ||||||  |||||||||  ||||||||| |  |||||||||||| | | || | ||    
T  12924 agtcatgttattctacttttcct-gaaacatagcaattctaggatgttttgatgtaattcacaaagaaatcaagcaaatcgacaaagcaagaaatgtgaa 13022  T
Q  428 gacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatc 527  Q
    ||||||||||||||||||||| | ||| || ||||||||||||||| ||  |||  ||||||||||||| |||| || || ||||||   | |||||| |    
T  13023 gacttgtgaagactttgggaagatcatgaatgaagattcaagaggcctcggaaggaattacaaagggagaaattatgttctcaagtc---ctaagacacc 13119  T
Q  528 ttatatggaag-aaacacccaaaaagtcgaagaaaca 563  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  13120 ttatatggaagcaaacacccaaaaagacgaagaaaca 13156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 303 - 536
Target Start/End: Complemental strand, 12086 - 11855
Alignment:
Q  303 gggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatca 401  Q
    ||||||||| |||| ||||||||||   |||| |||||||||| || ||| | |||||||||||| ||||||||||||  | ||||| | ||||||||||    
T  12086 gggacatttataatgttttctatatttgagtc-tgtaattcta-ttcttcccaaaacatagcaattctagggtgttttgatttaatttacgaagaaatca 11989  T
Q  402 tg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaa 499  Q
    |   ||||  |||||| | |||| | || | | |||||||||||| ||| | ||  || ||||||||||||||||||||||||| ||||| |||||| ||    
T  11988 tacaaatcagcaaagcaagacatctaaaaattagtgaagactttgcgaaaatcaagaatgaagattcaagaggcatcaaaagacgttacagagggagaaa 11889  T
Q  500 ttttgctcgcaagtcccaccaagacatcttatatgga 536  Q
    || |  || || |||   |||||||||||||||||||    
T  11888 ttatattcacaggtc---ccaagacatcttatatgga 11855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 309 - 549
Target Start/End: Complemental strand, 20268376 - 20268137
Alignment:
Q  309 tttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aat 406  Q
    |||||||| ||||| || || |||||||||||||||||||  || |||||||| ||||  |||||||||||  | ||| ||||||||||||||||  |||    
T  20268376 tttgtaatgttttc-atttcgagtcatgtaattctagtttccct-gaaacataacaattttagggtgttttgatataagtcaagaagaaatcatgccaat 20268279  T
Q  407 cgacaaagctaaacat-ttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgc 505  Q
    |  |||||| |||||| || ||||||||| ||||  ||||||| | ||| || ||||||| ||||||   |||||||||||||||||||||||||||||     
T  20268278 cagcaaagcaaaacatcttgaagacttgtaaagatcttgggaagatcatgaatgaagatttaagaggtcacaaaagacattacaaagggaggaattttgt 20268179  T
Q  506 tcgcaagtcccaccaagacatcttatatggaa-gaaacacccaaa 549  Q
    ||  |||||   |||| |||||||||||||||  |||||||||||    
T  20268178 tcttaagtc---ccaatacatcttatatggaataaaacacccaaa 20268137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 309 - 549
Target Start/End: Complemental strand, 21055005 - 21054766
Alignment:
Q  309 tttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aat 406  Q
    |||||||| ||||| || || |||||||||||||||||||  || |||||||| ||||  |||||||||||  | ||| ||||||||||||||||  |||    
T  21055005 tttgtaatgttttc-atttcgagtcatgtaattctagtttccct-gaaacataacaattttagggtgttttgatataagtcaagaagaaatcatgccaat 21054908  T
Q  407 cgacaaagctaaacat-ttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgc 505  Q
    |  |||||| |||||| || ||||||||| ||||  ||||||| | ||| || ||||||| ||||||   |||||||||||||||||||||||||||||     
T  21054907 cagcaaagcaaaacatcttgaagacttgtaaagatcttgggaagatcatgaatgaagatttaagaggtcacaaaagacattacaaagggaggaattttgt 21054808  T
Q  506 tcgcaagtcccaccaagacatcttatatggaa-gaaacacccaaa 549  Q
    ||  |||||   |||| |||||||||||||||  |||||||||||    
T  21054807 tcttaagtc---ccaatacatcttatatggaataaaacacccaaa 21054766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 238 - 563
Target Start/End: Complemental strand, 18836851 - 18836539
Alignment:
Q  238 tcaattatttttagtcagttttcatctagagtaaaggagtattagaaaattttcttattgtttttgggacatttgtaatattttctatatcaagtcatgt 337  Q
    ||||| ||||| ||| |||||||||| | | || ||||||||||||| ||||  |||| |||||  ||||||||||||| ||| ||||||  ||||||||    
T  18836851 tcaatcattttaagttagttttcatccataatataggagtattagaacatttgtttatggttttcaggacatttgtaatgtttactatattgagtcatgt 18836752  T
Q  338 aattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtg 435  Q
    |||| || |||| |   |||||||| | | ||||||||||||  ||||||| |||||| |||||||  ||||| |||| |  |||||||          |    
T  18836751 aattatacttttccaa-aaacatagtatt-ctagggtgttttgatgtaatt-aagaagtaatcatgccaatcggcaaaacataacattt----------g 18836665  T
Q  436 aagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatgg 535  Q
    ||||||||||||| | ||| || ||| ||||||||||| || ||||||||| ||||||||| ||||| | || ||||||   | ||||||||||||||||    
T  18836664 aagactttgggaagatcatgaatgaatattcaagaggcgtcgaaagacattgcaaagggagcaatttcgttcccaagtc---ctaagacatcttatatgg 18836568  T
Q  536 aag-aaacacccaaaaagtcgaagaaaca 563  Q
    ||| |||||||||||| |  |||||||||    
T  18836567 aagcaaacacccaaaaggatgaagaaaca 18836539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 303 - 470
Target Start/End: Original strand, 35861565 - 35861733
Alignment:
Q  303 gggacatttgtaatattttctatatc-aagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatca 401  Q
    |||| ||| ||||| ||||||||||  |||||||||||||||| |||||| | |||||||||||| ||||||||||||  |||||||||  |||||||||    
T  35861565 gggatattcgtaatgttttctatatttaagtcatgtaattctactttttc-caaaacatagcaat-ctagggtgttttgatgtaattcacaaagaaatca 35861662  T
Q  402 tg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaaga 470  Q
    ||  ||||| |||| | |||||| | |||| ||||||||||||||  || | ||| || ||||||||||||    
T  35861663 tgcaaatcggcaaaacaaaacatctgaagatttgtgaagactttgaaaagatcatgaatgaagattcaaga 35861733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 309 - 442
Target Start/End: Complemental strand, 17649789 - 17649655
Alignment:
Q  309 tttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aat 406  Q
    |||||||||||||||||||  ||||||| || |||| |||| ||||||||||| |||| ||||| ||||||  ||||||| | ||||||||||||  |||    
T  17649789 tttgtaatattttctatattgagtcatggaactctactttt-ctcgaaacatatcaattctaggatgttttgatgtaatttacgaagaaatcatgcaaat 17649691  T
Q  407 cgacaaagctaaacatttcaagacttgtgaagactt 442  Q
    || |||||  ||| |||| ||||||| |||||||||    
T  17649690 cggcaaagtaaaatatttgaagacttatgaagactt 17649655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 354 - 565
Target Start/End: Original strand, 24518740 - 24518952
Alignment:
Q  354 gaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacac 451  Q
    |||||||| ||||  || ||||||||  |||||||||  |||||||||||  ||||| ||||   |||||  | |||| |||||| ||||||||||| |     
T  24518740 gaaacataacaattttaaggtgttttcatgtaattcacaaagaaatcatgcaaatcggcaaaataaaacacctgaagatttgtgaggactttgggaagat 24518839  T
Q  452 cata-aacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaaa 549  Q
     | | || ||||||| ||||||| ||| ||||||||||| || ||||||||| | || |||||    ||||||||||||||||||||| |||||||||||    
T  24518840 taaagaatgaagatttaagaggcctcagaagacattacagagagaggaatttagttcccaagt---tccaagacatcttatatggaagcaaacacccaaa 24518936  T
Q  550 aagtcgaagaaacaag 565  Q
    ||| |||| |||||||    
T  24518937 aagacgaaaaaacaag 24518952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 303 - 504
Target Start/End: Original strand, 13833706 - 13833909
Alignment:
Q  303 gggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatca 401  Q
    |||||||||||||| ||||||||||   |||||| ||||| || |||| | | ||||||| |||| ||| ||||||||  |||||||||  || ||||||    
T  13833706 gggacatttgtaatgttttctatattttagtcatataattatacttttcc-caaaacataacaattctaaggtgttttgatgtaattcacaaataaatca 13833804  T
Q  402 tgaa--tcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaa 499  Q
    || |  |||| ||||| | |||| | |||||||| |||||| ||||||| | ||| |  ||||||||||||||| ||| ||||| ||||||| ||| |||    
T  13833805 tgcaactcgataaagcaagacatctgaagacttgcgaagacgttgggaagagcatgattgaagattcaagaggcctcataagactttacaaatggatgaa 13833904  T
Q  500 ttttg 504  Q
    |||||    
T  13833905 ttttg 13833909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 299 - 502
Target Start/End: Complemental strand, 14077120 - 14076915
Alignment:
Q  299 ttttgggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaa 397  Q
    |||||||||||||||||||||||||||||   ||| |||| |||||| | || ||  ||||||||||||  || ||||||||  ||||||||| ||||||    
T  14077120 ttttgggacatttgtaatattttctatatttgagt-atgttattctattcttccta-aaacatagcaattttatggtgttttgatgtaattcatgaagaa 14077023  T
Q  398 atcatg--aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccata-aacgaagattcaagaggcatcaaaagacattacaaaggg 494  Q
    ||||||  ||||||||| || | |||| | |||| |||||||||||| || || |  | | || ||||||||||||||| | | || | |||||||||||    
T  14077022 atcatgcaaatcgacaatgcaagacatctgaagatttgtgaagacttgggcaagattaaagaatgaagattcaagaggccttagaaaatattacaaaggg 14076923  T
Q  495 aggaattt 502  Q
    ||||||||    
T  14076922 aggaattt 14076915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 298 - 501
Target Start/End: Complemental strand, 15557388 - 15557188
Alignment:
Q  298 tttttgggacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaaga 396  Q
    |||| |||||||||||||  |||||||| |   ||||||||||||||| || ||| |||| ||||| |||  |||||||||||  ||||||||| |||||    
T  15557388 ttttcgggacatttgtaaggttttctatgtttgagtcatgtaattcta-ttcttcccgaaccatagtaattttagggtgttttgatgtaattcacgaaga 15557290  T
Q  397 aatcatgaatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggag 496  Q
    || ||   ||||||||||| | ||||   |||||| |||||||||||||||| | ||| || |||| |||||||||  |  ||||||| |||| ||||||    
T  15557289 aacca---atcgacaaagcaagacatccgaagactcgtgaagactttgggaagatcatgaatgaaggttcaagaggatttgaaagacagtacagagggag 15557193  T
Q  497 gaatt 501  Q
     ||||    
T  15557192 aaatt 15557188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 254 - 470
Target Start/End: Complemental strand, 17976274 - 17976062
Alignment:
Q  254 agttttcatctagagtaaaggagtattag-aaaattttcttattgtttttgggacatttgtaatattttctatatcaagtcatgtaattctagtttttct 352  Q
    |||||| ||||||| || ||||||||||| ||||  ||| ||||||||||  |||||||||||| ||||||| ||  |||||||||||||||            
T  17976274 agttttaatctagaatagaggagtattagaaaaaaattcctattgtttttaagacatttgtaatgttttcta-attgagtcatgtaattcta-------c 17976183  T
Q  353 cgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacat-ttcaagacttgtgaagactttgggaac 449  Q
    | |||||||||| | || |||||||||  |||||||||| |||||||||||  ||||| |||||   ||||| || ||||||||| ||||   ||||||     
T  17976182 caaaacatagcatttcttgggtgttttgatgtaattcaataagaaatcatgcaaatcggcaaagaagaacatcttgaagacttgtaaagatcgtgggaaa 17976083  T
Q  450 accataaacgaagattcaaga 470  Q
    ||||| || ||||||||||||    
T  17976082 accatgaatgaagattcaaga 17976062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 459 - 563
Target Start/End: Original strand, 24381587 - 24381689
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaaaaagtcgaa 557  Q
    ||||||||||||| | ||| ||||||||||||||| |||||||||| || |||||    ||||||||||||| ||  ||| |||||||||||||| | ||    
T  24381587 gaagattcaagagtcctcagaagacattacaaaggaaggaattttgttcccaagt---tccaagacatcttacatataagaaaacacccaaaaagacaaa 24381683  T
Q  558 gaaaca 563  Q
    ||||||    
T  24381684 gaaaca 24381689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 501
Target Start/End: Original strand, 15176567 - 15176735
Alignment:
Q  335 tgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagcta-aacatttcaagact 431  Q
    ||||||||||||||| | | ||||||||||||  |||||  ||||   |||||||| ||||||||||||  ||||| |||| | | ||||| | |||| |    
T  15176567 tgtaattctagttttcc-caaaacatagcaattttaggggtttttgaagtaattcacgaagaaatcatgcaaatcggcaaatcaagaacatctgaagaat 15176665  T
Q  432 tgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    ||| ||||||||||||| || |  || ||||||||||||||| |||  |||| ||||| |||||||||||    
T  15176666 tgtcaagactttgggaagacaaagaatgaagattcaagaggcctcaggagactttacatagggaggaatt 15176735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 438
Target Start/End: Original strand, 28904040 - 28904207
Alignment:
Q  272 aggagtattagaaaattttcttattgtttttgggacatttgtaatattttctata-tcaagtcatgtaattctagtttttctcgaaacatagcaatacta 370  Q
    ||||||||||||||  || ||||| | ||| |||||||||||||| ||||||||| |  |||||||||||| || ||||||  |||||||||||||  ||    
T  28904040 aggagtattagaaacattgcttat-gatttcgggacatttgtaatgttttctatatttgagtcatgtaattata-tttttcctgaaacatagcaattata 28904137  T
Q  371 gggtgttttagtgtaattcaagaagaaatcatg--aatcgacaaagctaaacatttcaagacttgtgaag 438  Q
     | ||||||  ||||||||| ||| ||||||||  ||||| |||||| | ||| || || ||||||||||    
T  28904138 tgatgttttgatgtaattcacgaacaaatcatgcaaatcggcaaagcaagacacttgaacacttgtgaag 28904207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 561
Target Start/End: Original strand, 15058658 - 15058863
Alignment:
Q  355 aaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatgaat--cgacaaagctaaacatttcaagacttgtgaagactttgggaacacc 452  Q
    ||||||||||||  |||| | ||||  ||||||||| |||||||||||| ||  |  |||||| | |||| | |||| ||||||| || ||||||| |      
T  15058658 aaacatagcaattttaggatattttgttgtaattcatgaagaaatcatgtatatcagcaaagcaagacatctaaagatttgtgaaaaccttgggaaaatg 15058757  T
Q  453 ataaacgaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaaaaa 551  Q
    |  || ||||||||||||||  ||| ||||| ||||||| |||| ||||||| || ||||| ||    || ||||||||||||||| ||||| |||||||    
T  15058758 aagaatgaagattcaagaggtctcagaagacgttacaaatggagaaattttgttcccaagttcc----aggcatcttatatggaagcaaacatccaaaaa 15058853  T
Q  552 gtcgaagaaa 561  Q
    | ||||||||    
T  15058854 gacgaagaaa 15058863  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 299 - 401
Target Start/End: Complemental strand, 2638718 - 2638616
Alignment:
Q  299 ttttgggacatttgtaatattttctata-tcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgtt-ttagtgtaattcaagaaga 396  Q
    |||||||||||||||||| ||||||||| | |||| ||||||| ||| || ||| ||||||||||||||  ||||||||| |||  |||||||| |||||    
T  2638718 ttttgggacatttgtaatgttttctatatttaagt-atgtaatacta-ttcttcccgaaacatagcaattttagggtgttcttaaagtaattcacgaaga 2638621  T
Q  397 aatca 401  Q
    |||||    
T  2638620 aatca 2638616  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 26829569 - 26829631
Alignment:
Q  303 gggacatttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaat 366  Q
    ||||| |||||||||||||||||||    | |||||||||||| ||||||||||||||||||||    
T  26829569 gggacttttgtaatattttctatatttgattatgtaattctag-ttttctcgaaacatagcaat 26829631  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 501
Target Start/End: Complemental strand, 7984951 - 7984909
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||    
T  7984951 gaagattcaagaggcatcataagactttacaatgggaggaatt 7984909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 18007485 - 18007431
Alignment:
Q  349 ttctcgaaacatagcaatactagggtgttttag-tgtaattcaagaagaaatcat 402  Q
    ||||||||||| |||||| |||||||||||| | ||||||||| |||||||||||    
T  18007485 ttctcgaaacaaagcaatcctagggtgtttttgatgtaattcacgaagaaatcat 18007431  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 501
Target Start/End: Complemental strand, 22501670 - 22501628
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||    
T  22501670 gaagattcaagaggcctcagaagacattacagagggaggaatt 22501628  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 691
Target Start/End: Original strand, 14006384 - 14006453
Alignment:
Q  622 tttacgtcttttgaataagtgatgagttcgcggggtttcatttcctaccatctgttgagttgcacctatt 691  Q
    |||||||||| |  ||||||||| | |||| ||||||| ||||||||||| ||||||  |||||||||||    
T  14006384 tttacgtcttctatataagtgataatttcgtggggttttatttcctaccagctgttggattgcacctatt 14006453  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 546
Target Start/End: Complemental strand, 17973564 - 17973504
Alignment:
Q  484 attacaaagggaggaattttgctcgcaagtcccaccaagacatcttatatggaag-aaacaccc 546  Q
    ||||||||||||| ||||||| || ||||||   ||||||||||||||||||||| ||||||||    
T  17973564 attacaaagggagaaattttgttcccaagtc---ccaagacatcttatatggaagcaaacaccc 17973504  T

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Target: scaffold0072 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 305 - 563
Target Start/End: Complemental strand, 38283 - 38025
Alignment:
Q  305 gacatttgtaatattttctatatca-agtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg 403  Q
    |||||||||||| ||||||||||   ||||||||||||||  |||||| ||||||||| ||||  |||||||||||  ||||||||| |||||||||| |    
T  38283 gacatttgtaatgttttctatatttgagtcatgtaattctc-tttttcccgaaacataacaattttagggtgttttgatgtaattcacgaagaaatcacg 38185  T
Q  404 --aatcgacaaagctaaacatttcaagacttgtgaagactttgggaacaccataaacgaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
      |||||  ||| | | ||||   ||||||| ||||||||||||||| | ||| || ||||| | ||||||| |||||||| |||| | |||||| ||||    
T  38184 caaatcggaaaaacaagacataggaagacttatgaagactttgggaagatcatgaatgaagaattaagaggcctcaaaagatattatagagggagaaatt 38085  T
Q  502 ttgctcgcaagtcccaccaagacatcttatatggaag-aaacacccaaaaagtcgaagaaaca 563  Q
    ||| || || |||   |||||||||||||||||| || |||||||||||| | ||| ||||||    
T  38084 ttggtcccaggtc---ccaagacatcttatatggtagcaaacacccaaaaggacgaggaaaca 38025  T

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Target: scaffold0085 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 308 - 403
Target Start/End: Complemental strand, 23991 - 23896
Alignment:
Q  308 atttgtaatattttctatatcaagtcatgtaattctagtttttctcgaaacatagcaatactagggtgttttagtgtaattcaagaagaaatcatg 403  Q
    ||||||||| ||||||||||  ||||||||||||| ||||||||||||||||| |||||  || |||||||   ||||||||||||| ||||||||    
T  23991 atttgtaatgttttctatattgagtcatgtaattcaagtttttctcgaaacatggcaattataaggtgtttcgatgtaattcaagaataaatcatg 23896  T

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Target: scaffold0451 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 501
Target Start/End: Original strand, 10353 - 10395
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaatt 501  Q
    ||||||||||||||| ||||||||| | |||||||||||||||    
T  10353 gaagattcaagaggcctcaaaagacttcacaaagggaggaatt 10395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 459 - 513
Target Start/End: Original strand, 202093 - 202147
Alignment:
Q  459 gaagattcaagaggcatcaaaagacattacaaagggaggaattttgctcgcaagt 513  Q
    |||||||||| |||| || |||||||||||| |||||||||||||| || |||||    
T  202093 gaagattcaataggcctccaaagacattacagagggaggaattttgttcccaagt 202147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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