View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8355_low_11 (Length: 302)
Name: NF8355_low_11
Description: NF8355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8355_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 287
Target Start/End: Complemental strand, 11686851 - 11686568
Alignment:
| Q |
4 |
atgaagataagagaaggcaaaggccatgttcgaagagcatttgcaattattcaattcactactgctaaacatgctacgtatatgatgaccttgtctaata |
103 |
Q |
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| T |
11686851 |
atgaagataagagaaggcaaaggccatgttcgaagagcatttgcaattattcaattcaccactgctaaacatgctacgtatatgatgaccttgtctaaca |
11686752 |
T |
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| Q |
104 |
taagtttgccaacatggcggtacgggggctacgatttaaaagttcgggaaatggaaagagatattgatccaagaccaagagcatttttggaaagtttaga |
203 |
Q |
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| T |
11686751 |
taagtttgccaacatggcggtatgggggctacgatttaaaagttcgggaaatggaaagagatattaatccaagaccaagagcatttttggaaagtttaga |
11686652 |
T |
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| Q |
204 |
tgatgtgaaactgcattttggctgtccgatatcaaaggaaagattctctgcattatggagagaggtggatgttagtgtagaatt |
287 |
Q |
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| T |
11686651 |
tgatgtgaaactgcattttggctgtcagatctcaaaggaaagattctctgcattatggagagaggtggatgttagtgttgaatt |
11686568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 4 - 287
Target Start/End: Complemental strand, 11690863 - 11690580
Alignment:
| Q |
4 |
atgaagataagagaaggcaaaggccatgttcgaagagcatttgcaattattcaattcactactgctaaacatgctacgtatatgatgaccttgtctaata |
103 |
Q |
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| T |
11690863 |
atgaagataagggaaggcaaaggccatgttcgaagaacatttgcaattattcaattcactactgctaaacatgctacatatatgatgaccttgtctaaca |
11690764 |
T |
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| Q |
104 |
taagtttgccaacatggcggtacgggggctacgatttaaaagttcgggaaatggaaagagatattgatccaagaccaagagcatttttggaaagtttaga |
203 |
Q |
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| T |
11690763 |
taagtttgccaacatggcggtacgggggctacgatttaaaagttcgggaaatggaaagagatattaatccaagaccaagagcatttttggaaagtttaga |
11690664 |
T |
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| Q |
204 |
tgatgtgaaactgcattttggctgtccgatatcaaaggaaagattctctgcattatggagagaggtggatgttagtgtagaatt |
287 |
Q |
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| T |
11690663 |
tgatgtgaaactgcattttggctgtcagatctcaaaggaaagattctctgcattatggagagaggtggatgttagtgttgaatt |
11690580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 11627174 - 11627445
Alignment:
| Q |
7 |
aagataagagaaggcaaaggccatgttcgaagagcatttgcaattattcaattcactactgctaaacatgctacgtatatgatgaccttgtctaatataa |
106 |
Q |
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| T |
11627174 |
aagataagagaaggcaaagcccgtattcgaacagcatttgcaattatccaattcactactaaagatcatgttacagatatgatggccttacctagcagaa |
11627273 |
T |
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| Q |
107 |
gtttgccaacatggcggtacgggggctacgatttaaaagttcgggaaatggaaagagatattgatccaagaccaagagcatttttggaaagtttagatga |
206 |
Q |
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| T |
11627274 |
gtttgtcaccattgcagtacgggagctcctatttaaaagttcgggaaatggaaagagatattgttcgaaggccaagggaaattttgcacagtttgaatga |
11627373 |
T |
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| Q |
207 |
tgtgaaactgcattttggctgtccgatatcaaaggaaagattctctgcattatggagagaggtggatgttag |
278 |
Q |
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| T |
11627374 |
tgtgaaactgtatttttgctgtcaaatctcagaggaaagattatctgttttatggagagaggtggatgttag |
11627445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 11634959 - 11635230
Alignment:
| Q |
4 |
atgaagataagagaaggcaaaggccatgttcgaagagcatttgcaattattcaattcactactgctaaacatgctacgtatatgatgaccttgtctaata |
103 |
Q |
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| T |
11634959 |
atgaagattagagtaggcaatggccgggttaaaagagcatttgcaattattcagttcactactgcaaaacatgctacattcatgatggccttacctagca |
11635058 |
T |
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| Q |
104 |
taagtttgccaacatggcggtacgggggctacgatttaaaagttcgggaaatggaaagagatattgatccaagaccaagagcatttttggaaagtttaga |
203 |
Q |
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| T |
11635059 |
gaa------caaaattgcggttcggagactcctatttaaaagttagggaattggaaagagatattgatccaaagccaagggcattcttggacagtttaga |
11635152 |
T |
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| Q |
204 |
tgatgtgaaactgcattttggctgtccgatatcaaaggaaagattctctgcattatggagagaggtggatgttagtgtaga |
284 |
Q |
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| T |
11635153 |
cgatgttaaactgtattttggctgtcagatctcaaaggaaagattctctaaattatgga---aggtggatgctagtgtaga |
11635230 |
T |
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