View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8355_low_15 (Length: 256)
Name: NF8355_low_15
Description: NF8355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8355_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 49686333 - 49686089
Alignment:
| Q |
1 |
caaatgagagaacaaaagatgtagtgcatgaactagagccatcctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686333 |
caaatgagagaacaaaagatgtagtgcatgaactagagccatcctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcc |
49686234 |
T |
|
| Q |
101 |
tttgaagccaattgacacgctatagttgacttggaaaattactacacaagtcatgtgaatttgtgtctatcacggactacaatgattttctatcatttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686233 |
tttgaagccaattgacacgctatagttgacttggaaaattactacacaagtcatgtgaatttgtgtctatcacggactacaatgattttctatcatttat |
49686134 |
T |
|
| Q |
201 |
ttgttttgaaattgaaactcactttttgctaaattctctgctact |
245 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||| |||| |
|
|
| T |
49686133 |
ttgttttgaaattgaaacccaatttttgctaaattctctgatact |
49686089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 49690554 - 49690421
Alignment:
| Q |
31 |
aactagagccatcctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgac |
130 |
Q |
| |
|
||||| |||||| | ||| |||| |||||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
49690554 |
aactaaagccattcaattgtgttaaacaatttgttccacactt-ttaatttgcacgacataaatatattctttgaagcaaattgacacgc--tagttgac |
49690458 |
T |
|
| Q |
131 |
ttggaaaat---tactacacaagtcatgtgaatttgt |
164 |
Q |
| |
|
||||||||| ||| ||||||||| ||| ||||||| |
|
|
| T |
49690457 |
ttggaaaatgagtaccacacaagtcttgtaaatttgt |
49690421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 49690378 - 49690329
Alignment:
| Q |
194 |
catttatttgttttgaaattgaaactcactttttgctaaattctctgcta |
243 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
49690378 |
catttatttcttttgaaattgaaatccacttcttgctaaattctctgcta |
49690329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University