View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8355_low_17 (Length: 236)
Name: NF8355_low_17
Description: NF8355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8355_low_17 |
 | |
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| [»] scaffold0312 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 949532 - 949747
Alignment:
| Q |
2 |
actattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgcccttagaaggtgttgatg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
949532 |
actattgtgtgtcacaaagagaattacccttacacagttttttactgtcataaaactgattcaaccgaagtttactctgtgcccttggaaggtgttgatg |
949631 |
T |
|
| Q |
102 |
gaaacatggttaaaactattgttgtttgtcacactgatacatcagaatggaaccctaaacatttggcttttcaagtgctcaaaattcaaccagggactgt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
949632 |
gaaacatggttaaaactattgttgtttgtcacactgatacatcagaatggaaccctaaacatttggcttttcaagtgctcaaagttcaaccagggactgt |
949731 |
T |
|
| Q |
202 |
tcctatttgtcacatc |
217 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
949732 |
tcctatttgtcacatc |
949747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 942543 - 942758
Alignment:
| Q |
2 |
actattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgcccttagaaggtgttgatg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
942543 |
actattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattggaaggtgttgatg |
942642 |
T |
|
| Q |
102 |
gaaacatggttaaaactattgttgtttgtcacactgatacatcagaatggaaccctaaacatttggcttttcaagtgctcaaaattcaaccagggactgt |
201 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||| |||||||||||||||| |
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| T |
942643 |
gaaacatggttaaaactattgctgtttgtcacactgatacatcagaatggaatcctaaacatttggctttttatgtgcttaaagttcaaccagggactgt |
942742 |
T |
|
| Q |
202 |
tcctatttgtcacatc |
217 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
942743 |
tcctatttgtcacatc |
942758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 960504 - 960719
Alignment:
| Q |
2 |
actattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgcccttagaaggtgttgatg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
960504 |
actattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattggaaggtgttgatg |
960603 |
T |
|
| Q |
102 |
gaaacatggttaaaactattgttgtttgtcacactgatacatcagaatggaaccctaaacatttggcttttcaagtgctcaaaattcaaccagggactgt |
201 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||| |||||||||||||||| |
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|
| T |
960604 |
gaaacatggttaaaactattgctgtttgtcacactgatacatcagaatggaatcctaaacatttggctttttatgtgcttaaagttcaaccagggactgt |
960703 |
T |
|
| Q |
202 |
tcctatttgtcacatc |
217 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
960704 |
tcctatttgtcacatc |
960719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 971813 - 972028
Alignment:
| Q |
2 |
actattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgcccttagaaggtgttgatg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
971813 |
actattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattggaaggtgttgatg |
971912 |
T |
|
| Q |
102 |
gaaacatggttaaaactattgttgtttgtcacactgatacatcagaatggaaccctaaacatttggcttttcaagtgctcaaaattcaaccagggactgt |
201 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| ||| |||||||||||||||| |
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|
| T |
971913 |
gaaacatggttaaaactattgctgtttgtcacactgatacatcagaatggaatcctaaacatttggctttttatgtgcttaaagttcaaccagggactgt |
972012 |
T |
|
| Q |
202 |
tcctatttgtcacatc |
217 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
972013 |
tcctatttgtcacatc |
972028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 936629 - 936835
Alignment:
| Q |
8 |
gtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgcccttagaaggtgttgatggaaaca |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| | |
|
|
| T |
936629 |
gtgtgtcacaaagagagttacccttatgcagttttttactgtcataaaactgattcaactaaagtttactctgtgcctttggaaggtgttgatggaagta |
936728 |
T |
|
| Q |
108 |
tggttaaaactattgttgtttgtcacactgatacatcagaatggaaccctaaacatttggcttttcaagtgctcaaaattcaaccagggactgttcctat |
207 |
Q |
| |
|
|||||| || ||| ||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| ||||||| || |||||||| | |
|
|
| T |
936729 |
gagttaaagctgttgctgtgtgtcacactgatacttcacaatggaatcctaaacatttggcttttcaagtgctcaatgttcaacctggaactgttccagt |
936828 |
T |
|
| Q |
208 |
ttgtcac |
214 |
Q |
| |
|
||||||| |
|
|
| T |
936829 |
ttgtcac |
936835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 214
Target Start/End: Complemental strand, 419731 - 419523
Alignment:
| Q |
6 |
ttgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgcccttagaaggtgttgatggaaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| ||||| ||| |||||||||||| || || |||| |||||||| |
|
|
| T |
419731 |
ttgtgtgtcacaaagagaattacccttatgcagtgttttactgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaag |
419632 |
T |
|
| Q |
106 |
catggttaaaactattgttgtttgtcacactgatacatcagaatggaaccctaaacatttggcttttcaagtgctcaaaattcaaccagggactgttcct |
205 |
Q |
| |
|
|| |||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
419631 |
cagagttaaagctattgctgtgtgtcacactgatacatcagaatggaacccaaaacatttggcatttcaagtactcaaagttcaacctgggactgttcca |
419532 |
T |
|
| Q |
206 |
atttgtcac |
214 |
Q |
| |
|
|||||||| |
|
|
| T |
419531 |
gtttgtcac |
419523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 975430 - 975638
Alignment:
| Q |
6 |
ttgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgcccttagaaggtgttgatggaaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| ||||| ||| |||||||||||| || || |||| |||||||| |
|
|
| T |
975430 |
ttgtgtgtcacaaagagaattacccttatgcagtgttttactgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaag |
975529 |
T |
|
| Q |
106 |
catggttaaaactattgttgtttgtcacactgatacatcagaatggaaccctaaacatttggcttttcaagtgctcaaaattcaaccagggactgttcct |
205 |
Q |
| |
|
|| |||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
975530 |
cagagttaaagctattgctgtgtgtcacactgatacatcagaatggaacccaaaacatttggcatttcaagtactcaaagttcaacctgggactgttcca |
975629 |
T |
|
| Q |
206 |
atttgtcac |
214 |
Q |
| |
|
|||||||| |
|
|
| T |
975630 |
gtttgtcac |
975638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 909871 - 910082
Alignment:
| Q |
6 |
ttgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgcccttagaaggtgttgatggaaa |
105 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||||| || ||||||| |||||||| |
|
|
| T |
909871 |
ttgtgtgccacaaacggaattacccttatgcagttttttactgtcacaaaacagatgcaactaaagtttactctgtgcctttggaaggtgctgatggaag |
909970 |
T |
|
| Q |
106 |
catggttaaaactattgttgtttgtcacactgatacatcagaatggaaccctaaacatttggcttttcaagtgctcaaaattcaaccagggactgttcct |
205 |
Q |
| |
|
| |||||| || ||| | |||| ||| ||||||| ||| |||||| || |||||||||||||||||||||||||||| |||||| ||| ||| |||| |
|
|
| T |
909971 |
tagagttaaagctgttgctatttgccactctgatacttcacaatggagccttaaacatttggcttttcaagtgctcaaagttcaacaaggaacttttcca |
910070 |
T |
|
| Q |
206 |
atttgtcacatc |
217 |
Q |
| |
|
|||| |||||| |
|
|
| T |
910071 |
gtttgccacatc |
910082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 204
Target Start/End: Original strand, 924461 - 924602
Alignment:
| Q |
63 |
caactgaagtttactctgtgcccttagaaggtgttgatggaaacatggttaaaactattgttgtttgtcacactgatacatcagaatggaaccctaaaca |
162 |
Q |
| |
|
||||| ||||||||| | |||| | |||||||||||||||| || |||||| || ||| | |||| ||| ||||||| ||| |||||| |||||||| |
|
|
| T |
924461 |
caactaaagtttactatttgcctatggaaggtgttgatggaaccaaagttaaagctgttgctatttgccactctgatacttcacaatggagtcctaaaca |
924560 |
T |
|
| Q |
163 |
tttggcttttcaagtgctcaaaattcaaccagggactgttcc |
204 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
924561 |
tttggcttttcaagtactcaaaattcaacctggaactgttcc |
924602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 10840 - 11048
Alignment:
| Q |
6 |
ttgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgcccttagaaggtgttgatggaaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| ||||| ||| |||||||||||| || || |||| |||||||| |
|
|
| T |
10840 |
ttgtgtgtcacaaagagaattacccttatgcagtgttttactgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaag |
10939 |
T |
|
| Q |
106 |
catggttaaaactattgttgtttgtcacactgatacatcagaatggaaccctaaacatttggcttttcaagtgctcaaaattcaaccagggactgttcct |
205 |
Q |
| |
|
|| |||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
10940 |
cagagttaaagctattgctgtgtgtcacactgatacatcagaatggaacccaaaacatttggcatttcaagtactcaaagttcaacctgggactgttcca |
11039 |
T |
|
| Q |
206 |
atttgtcac |
214 |
Q |
| |
|
|||||||| |
|
|
| T |
11040 |
gtttgtcac |
11048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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