View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8355_low_2 (Length: 608)
Name: NF8355_low_2
Description: NF8355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8355_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 15 - 594
Target Start/End: Original strand, 46327695 - 46328274
Alignment:
| Q |
15 |
attctacaagcaagcatgactcaatcaacttaatatagaatgaatactgtgcattctctttagagagtaatactgaatgtattagggtctagttgtttta |
114 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46327695 |
attctacaagcaagcatgactcgatcaacttaatatagaatgaatactgtgcattctctttagagagtaatgctgaatgtattagggtctagttgtttta |
46327794 |
T |
|
| Q |
115 |
ttgcaagtctgcactggttttaattatatactcgtcatatgatatcataatgggtataaattaagaagttagtctattttcctttcttttagctgtatct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46327795 |
ttgcaagtctgcactggttttaattatatactcgtcatatgatatcataatgggtataaattaagaagttagtctattttcctttcttttagctgtatct |
46327894 |
T |
|
| Q |
215 |
tccctctctaaaatttggaatgcaacgatactcgaattggaccctatcattcctcatattttgaatcataattgttgtaattataaatctctatatcata |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46327895 |
tccctctctaaaatttggaatgcaacgatactcgaattggaccctatcattcctcatattttgaatcataattgttgtaattataaatctctatatcata |
46327994 |
T |
|
| Q |
315 |
atagnnnnnnnatatctttatcacaggaaccgggcgaaatggaagctcagatggctgaagttggcactacatatgtgatgaaaaatatcctcacaactcg |
414 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46327995 |
atagtttttttatatctttatcacaggaaccgggcgaaatggaagctcagatggctgaagttggcactacatatgtgatgaaaaatatcctcacaactcg |
46328094 |
T |
|
| Q |
415 |
gagaactggtcctccaatttttcccaagggagagtatggaactgggttcaacccggatacccctgataacttgccctcttggctcacagaagatgatctt |
514 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46328095 |
gaaaactggtcctccaatttttcccaagggagagtatggaactgggttcaacccggatacccctgataacttgccctcttggctcacagaagatgatctt |
46328194 |
T |
|
| Q |
515 |
gcttattttgtttctaaatttgagaaaacaggctttactggaggattgaactactatagaaactttaacttgtaattttt |
594 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46328195 |
gcttattttgtttctaaatttgagaaaacaggctttactggaggattgaactactatagaaactttaacttgtaattttt |
46328274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 332 - 590
Target Start/End: Original strand, 46323534 - 46323792
Alignment:
| Q |
332 |
ttatcacaggaaccgggcgaaatggaagctcagatggctgaagttggcactacatatgtgatgaaaaatatcctcacaactcggagaactggtcctccaa |
431 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| |||||||||||||| |
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| T |
46323534 |
ttatcacaggaaccgggcaaaatggaagctcagatggctgaagttggcactgcatatgtgatgaaaagtaccctcacaactcggaaaactggtcctccaa |
46323633 |
T |
|
| Q |
432 |
tttttcccaagggagagtatggaactgggttcaacccggatacccctgataacttgccctcttggctcacagaagatgatcttgcttattttgtttctaa |
531 |
Q |
| |
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| |||||||||||||||| ||||||||| ||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
46323634 |
tatttcccaagggagagtttggaactggattcaacccggacacccctgacaaattgccttcttggctcacagaagatgatcttgcttattttgtttccaa |
46323733 |
T |
|
| Q |
532 |
atttgagaaaacaggctttactggaggattgaactactatagaaactttaacttgtaat |
590 |
Q |
| |
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|||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
46323734 |
atttgagaaaacgggctttgttggaggattgaactactatagaaacttgaacttgtaat |
46323792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 333 - 590
Target Start/End: Complemental strand, 46530844 - 46530587
Alignment:
| Q |
333 |
tatcacaggaaccgggcgaaatggaagctcagatggctgaagttggcactacatatgtgatgaaaaatatcctcacaactcggagaactggtcctccaat |
432 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
46530844 |
tatcacaggaaccaggcaaaatggaagctgagatggctgaagttggcactgcatatgtgatgaaaaatatcctcacaactcgccaaactggtcccccaat |
46530745 |
T |
|
| Q |
433 |
ttttcccaagggagagtatggaactgggttcaacccggatacccctgataacttgccctcttggctcacagaagatgatcttgcttattttgtttctaaa |
532 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||| | ||| ||||||||||| |||||||| || |||||||||||||| || ||| |
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| T |
46530744 |
atttcccaagggagagtatggaactggattcaacccggatactcctgacaccttaccctcttggcttacagaagaagaccttgcttattttgtctccaaa |
46530645 |
T |
|
| Q |
533 |
tttgagaaaacaggctttactggaggattgaactactatagaaactttaacttgtaat |
590 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| |
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| T |
46530644 |
tttgagaaaacaggcttcactggagcattgaactactatagaaactttaacgtgtaat |
46530587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 333 - 590
Target Start/End: Complemental strand, 46523416 - 46523159
Alignment:
| Q |
333 |
tatcacaggaaccgggcgaaatggaagctcagatggctgaagttggcactacatatgtgatgaaaaatatcctcacaactcggagaactggtcctccaat |
432 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||||||||| |
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|
| T |
46523416 |
tatcacaggaaccaggcaaaatggaagctgagatggctgaagttggcactgcatatgtgatgaaaagtaccctcacaactcggaaaactggtcctccaat |
46523317 |
T |
|
| Q |
433 |
ttttcccaagggagagtatggaactgggttcaacccggatacccctgataacttgccctcttggctcacagaagatgatcttgcttattttgtttctaaa |
532 |
Q |
| |
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|||||||||||||||| ||||||||| |||||| | ||||| ||||| | ||| ||||||||||| ||||||||||| ||| |||||||||| || ||| |
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| T |
46523316 |
atttcccaagggagagtttggaactggattcaactcagatactcctgacaccttaccctcttggcttacagaagatgaccttacttattttgtctccaaa |
46523217 |
T |
|
| Q |
533 |
tttgagaaaacaggctttactggaggattgaactactatagaaactttaacttgtaat |
590 |
Q |
| |
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||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |
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| T |
46523216 |
tttgagaaaacaggcttcactggagcattgaactactacagaaactttaacttgtaat |
46523159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 327 - 593
Target Start/End: Complemental strand, 46519878 - 46519612
Alignment:
| Q |
327 |
tatctttatcacaggaaccgggcgaaatggaagctcagatggctgaagttggcactacatatgtgatgaaaaatatcctcacaactcggagaactggtcc |
426 |
Q |
| |
|
||||| ||| ||||||||| ||| |||| |||||| |||| ||||| ||||||||| |||||||| |||||||| ||||||||||||| | ||||||||| |
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|
| T |
46519878 |
tatctatattacaggaacctggcaaaatagaagctgagatagctgaggttggcactgcatatgtgctgaaaaatgtcctcacaactcgcaaaactggtcc |
46519779 |
T |
|
| Q |
427 |
tccaatttttcccaagggagagtatggaactgggttcaacccggatacccctgataacttgccctcttggctcacagaagatgatcttgcttattttgtt |
526 |
Q |
| |
|
|||||| ||||||| ||||||| |||||| || ||||| ||||||||||| || | ||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
46519778 |
tccaatacttcccaaaggagagtttggaacaggattcaatccggataccccagaaaccttgcccacttggctcacagaagacgatcttgcttattttgtc |
46519679 |
T |
|
| Q |
527 |
tctaaatttgagaaaacaggctttactggaggattgaactactatagaaactttaacttgtaatttt |
593 |
Q |
| |
|
|| |||| |||||| || ||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
46519678 |
tccaaatatgagaagactggcttcactggaggattgaattactatagaaactttaacttgtaatttt |
46519612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 351 - 577
Target Start/End: Complemental strand, 46464605 - 46464376
Alignment:
| Q |
351 |
aaatggaagctcagatggctgaagttggcactacatatgtgatgaaaaatatcctcacaactcggagaactggtcctccaatttttcccaagggagagta |
450 |
Q |
| |
|
||||||||||| |||||| |||||||||||| | |||||| ||||||||||||||||||| ||| || |||||||||||| ||||||| || ||||| |
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| T |
46464605 |
aaatggaagctaagatggttgaagttggcaccgcttatgtgctgaaaaatatcctcacaacacgggaaattggtcctccaatgcttcccaacggcgagta |
46464506 |
T |
|
| Q |
451 |
tggaactgggttcaacccggatacccctgataacttgccctcttggctcac---agaagatgatcttgcttattttgtttctaaatttgagaaaacaggc |
547 |
Q |
| |
|
|||||||| ||||||||||||| ||| | | |||| |||||||||| || |||||| || |||||||| ||||| ||||||||||| ||||||||| |
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|
| T |
46464505 |
cggaactggattcaacccggatatcccatacaccttgtcctcttggcttacagaagaagacgaccttgcttactttgtctctaaatttgacaaaacaggc |
46464406 |
T |
|
| Q |
548 |
tttactggaggattgaactactatagaaac |
577 |
Q |
| |
|
|| |||||||||||||| ||||| |||||| |
|
|
| T |
46464405 |
ttcactggaggattgaattactacagaaac |
46464376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 422 - 589
Target Start/End: Original strand, 88663 - 88830
Alignment:
| Q |
422 |
ggtcctccaatttttcccaagggagagtatggaactgggttcaacccggatacccctgataacttgccctcttggctcacagaagatgatcttgcttatt |
521 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||| ||||| ||||||| || |||| ||| || |||||||| | ||||| ||||||| ||||| |
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|
| T |
88663 |
ggtcctccaattttcccaaaaggagagtatggaactggattcaatccggatatgccagatatcttaccatcttggctttccgaagaagatcttgattatt |
88762 |
T |
|
| Q |
522 |
ttgtttctaaatttgagaaaacaggctttactggaggattgaactactatagaaactttaacttgtaa |
589 |
Q |
| |
|
|||| ||||||| | ||||| ||||| |||||||| ||||||||||||||||| || | ||||||| |
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|
| T |
88763 |
atgttactaaattcaacaaaactggcttcactggagggttgaactactatagaaatttgagcttgtaa |
88830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 7476284 - 7476364
Alignment:
| Q |
153 |
atgatatcataatgggtataaattaagaagttagtctattttcctttcttttagc--tgtatcttccctctctaaaatttg |
231 |
Q |
| |
|
|||| |||||||||| || ||| ||||||||| |||||||||| |||||||||| |||||| | |||||||||| |||| |
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|
| T |
7476284 |
atgacatcataatggacatgaatgaagaagttaatctattttccgttcttttagctatgtatcattcctctctaaattttg |
7476364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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