View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8355_low_22 (Length: 206)
Name: NF8355_low_22
Description: NF8355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8355_low_22 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 949518 - 949328
Alignment:
| Q |
1 |
cccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagtttcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
949518 |
cccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagttttg |
949419 |
T |
|
| Q |
101 |
aaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttct |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
949418 |
aaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttct |
949328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 960490 - 960300
Alignment:
| Q |
1 |
cccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagtttcg |
100 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
960490 |
cccaatttcttcactccttttgctattacatattgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcg |
960391 |
T |
|
| Q |
101 |
aaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttct |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
960390 |
aaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttct |
960300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 971799 - 971609
Alignment:
| Q |
1 |
cccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagtttcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
971799 |
cccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcg |
971700 |
T |
|
| Q |
101 |
aaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttct |
191 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
971699 |
aaatggtgaaatcaaccatagattccaatgaagttatacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttct |
971609 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 942529 - 942339
Alignment:
| Q |
1 |
cccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagtttcg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
942529 |
cccaatttcttcactccttttgctattacatattgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccgagtttcg |
942430 |
T |
|
| Q |
101 |
aaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttct |
191 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
942429 |
aaatggtgaaatcaaccatagattccaatgaagttatacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgttct |
942339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 936609 - 936422
Alignment:
| Q |
1 |
cccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagtttcg |
100 |
Q |
| |
|
|||||||| ||||| |||||||| || ||||||| |||||| || | || | ||| | ||||||||| |||| |||||| ||||||||||| ||||||| |
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| T |
936609 |
cccaatttcttcacaccttttgccattacatattcttgcaagtcactgctttcttttttcacttctgttgaaacagcttcgacattgtttccaagtttcg |
936510 |
T |
|
| Q |
101 |
aaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgt |
188 |
Q |
| |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
936509 |
aagtagtgaaatcaaccatagattccaatgatgttacacaaagcttttcctctcctttgatgccattttcttcacactcacttattgt |
936422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 909856 - 909672
Alignment:
| Q |
1 |
cccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgtggaaatagcttcaacattgtttccgagtttcg |
100 |
Q |
| |
|
|||| ||| |||||||| |||||||| ||||||||||| |||||| || | | || |||||||| |||| || |||||||||||||| || ||| |
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| T |
909856 |
cccattttcttcactccgtttgctattacatattgttgtaaacca---ctttctccatttacttctgttgaaacagtgtcaacattgtttccaagcttca |
909760 |
T |
|
| Q |
101 |
aaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcacactcacttattgt |
188 |
Q |
| |
|
|| |||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||| |||| ||||||||| ||||||||||| |
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| T |
909759 |
aagtagtgaaatcaatcatagattccaatgatgtcacacaaagcttttcctctcctttgataccatatgcttcacattcacttattgt |
909672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 419805 - 419927
Alignment:
| Q |
60 |
cacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg |
159 |
Q |
| |
|
||||||||| |||| ||| |||||||| || || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| |||||| |
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| T |
419805 |
cacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttg |
419904 |
T |
|
| Q |
160 |
atgccatttgcttcacactcact |
182 |
Q |
| |
|
|| || | ||||||||||||| |
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| T |
419905 |
atcccttgctcttcacactcact |
419927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 182
Target Start/End: Complemental strand, 975356 - 975234
Alignment:
| Q |
60 |
cacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg |
159 |
Q |
| |
|
||||||||| |||| ||| |||||||| || || ||||| ||| | ||||||||||||||||| |||||||| |||||||||| ||||||||| |||||| |
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|
| T |
975356 |
cacttctgttgaaacagcctcaacatttttaccaagtttagaagtcgtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttg |
975257 |
T |
|
| Q |
160 |
atgccatttgcttcacactcact |
182 |
Q |
| |
|
|| || | ||||||||||||| |
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| T |
975256 |
atcccttgctcttcacactcact |
975234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 916280 - 916185
Alignment:
| Q |
62 |
cttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctt |
157 |
Q |
| |
|
||||||| |||| |||||||||||||||||| || || ||| |||||||||||||||| ||||| ||||| ||||||||| ||||||||| |||| |
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|
| T |
916280 |
cttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttcctctcctt |
916185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 157
Target Start/End: Complemental strand, 924333 - 924236
Alignment:
| Q |
60 |
cacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctt |
157 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| || || ||| |||||||||||||||| || || ||||| ||||||||| ||||||||| |||| |
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| T |
924333 |
cacttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgactctaatgatgttacacaactcttttcctctcctt |
924236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 60 - 182
Target Start/End: Complemental strand, 10766 - 10644
Alignment:
| Q |
60 |
cacttctgtggaaatagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg |
159 |
Q |
| |
|
||||||||| |||| ||| |||||||| || || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| |||||| |
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| T |
10766 |
cacttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttg |
10667 |
T |
|
| Q |
160 |
atgccatttgcttcacactcact |
182 |
Q |
| |
|
|| || | ||||||||||||| |
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|
| T |
10666 |
atcccttgctcttcacactcact |
10644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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